Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02816 ATGACTCCTCGCGTCGATGATTTCGAAAACGATAATCTATCCTCCACCGATGACGACGATGACGACGGCTTCAAGGAGGATATGGCCGCGCTCTCCCGAGCCTGCATGATCGTTGTCCCAGGAGCTGACGATAATTCCGCCGCTGAAGACGATGTTCGGTCGGTGGACCCGCAAATTGATGCTGGCACCGCCATCGTTCCTGTCGGCACCGACTCGGACTCCGACGATCAGGACGACCTGGAATGTCTCAAGAGAGTGCAGAGCCTCTACCAGCCTCTGTCCGTTCTTCCGCCGCTTGAGCCGTCGGCGGCCGTGTCTGACGACGACGATGAGTTCGATGACCTCGAGACCGTGCGCGCCATCATGAAAAGGTTCGGCAACTACAACGAAGGTTTGCGGGAGGGTGGAATGGAAATGTTGGTCGAGGGGGATCAGACCTCGAGCCTGGGCTGTGAAGATGACATTGCTAATGGCTCAATCCGTTACGAATCAGATGGTGGTGAATTATGTCCTGTTTCTCAAGATCCTAATGAGGCTGCCACAGAGGAGTTGATTGAAAACATTGAAATGCAGCTTAGTGAGTTTGTTGAGAGTTCTGAACCTGATGGCTGGGAGTCATCCAGATTACCACAGAAAAGATTGAGCTGTCCTCCTGTTGTTCAGTGTTTTATTGATGCCATTAAGAAAAATAGGGATATGCAGAGATTTCTTAGAAGTAAGTTGGTTGAGCTTGAGGCTAAAATTGACGAAAACAAAAAGATAAGGAATAGAATTAAAATTCTTAAGGACTTCCAGGCTTCATGCACTAGAAGAACAGGGAATGCATTGTCACTGAAAAAAGATCCGCGTGCTCAATTAATATCTGCAAAAAAGTCTTCTGCTTCAAAGAAATCTAAGAAACATAAAAAGGCATCTGCAATGTGTTATGGCCCAGAAGAGAATTCTCATGTTGCTAATTATAGGATGGTATTGGAAAGATTTCCACTTTCATTGGATCGGAAAAAATGGTCCAAGGCAGAAAGGGATAGTCTTTTGAAGGGAATTAAGCAACAATTCCAAGAAATGGTGCTTCAACTTTCACTTTCAGTTGATAGAACAAGTTCCGAGGGCTTGCTTGGAGATGCAGATGACATGGATGATATAATTGCATCTGTTAAAGATCTTGAAGTTACACCAGAGAGGATTAGAAATTTTTTACCTAAAGTTAACTGGGATTTGATAGCTTCCATGTATGTTGGTGGCCATACTGGTGCTGAATGTGCATCAAGTAAGAGTTCAAGATCAACACATCATGCAGGTGGGGTTGTACATGACATGATTTTTAACATGGTGGTGCTTAGTATGTCTGTGGTGGTTGTCATCACAGATGTCGGATATGTAGACCGTAGAATAGTGTGGTTGAATTATGAAGATCCGATGATCAACCATGGTCCATGGACTAAGGAAGAGGACAGGTCTCTTTTACTTATTGTCCAAGATGCAGGCATCAGGAATTGGTTCAATATTGCTGCAGCATTGGGCACAAACAGGACCCCATTTCAATGCTTGTCACGATTCCAAAGGAGCTTAAATCCTTCCATGCTAAATAGTGAATGGACTGAGGAAGAAGATTCTCAACTCTGTTCTGCTGTGGCATACTTTGGTGATGGCAATTGGCAGTATGTGGCTTCTGTTTTAGAACGAAGGACAGGAACCCAGTGCTCAAATAGATGGAAAAAATCCCTTTGTCCTGAGAAGAAAGGGAGCTTTACTCAAGAGGAGGACATACGTCTAACAGTAGCAGTCATGCTCTTTGGACGGAAATGGAATCAAATAGCTAAATATGTTCCCGGCCGGATCCAATCTCAGTGTAGGGACAGATACCTCAATAGTCTGGATCCTTCTTTGAAATGGGGTGGATGGACCGAGGAAGAGGATTTAAGACTAGAAACTGCAATTGCCAAGCATGGATATTGCTGGTCTAAGATTGCTGAAGAAGTACCTCCCCGTACTGATTCTCAATGCCGAAAGAGATGGAAGGTATTATGTCCTGAACAAGTTCCTTTGCTTCAAGAAGCAAGAAAGAAGCAGAGGTCTATTATTGGAAGTAACTTCGTTGATCGAGAATCTGACCGCCCCACCATTACACTTAATGACTTTCTACCGATACTTGCATTAGCTCCAAAATCTGATGTAGGTGCTTCAAATCTCCGGAAGAAGCGCAAGTCAAGCAATGTTACCAAGAAAATGAGCTCCAGGAAACGTGCAAAGAGAACTCGACGTTGTACCAAAGAAGTACAAGATACAGAGGTATACAACGAGGATGAGTTCTATCCAGTCTCTGCATGCAGCAAACTTCCCAAGAATAAGAGGAGGTCCGAAAGACATGCAAAAAGCAGTCGAAATGGTCCCCAAGAATCAGTGGACATATCTCGTAGTGACAAGGTCAAGACATGCAATGAGGGTTCAGGAACCCAATCCACTATTGCGTATTCTGAAAATCAAGATCCAGACAGCATGACCCTTGCATGTTTTATACGCAAGAAATCAAATGAGGTATTATCTAGTTTTACTAAAACTCTGAGTCAGACTTCCTTCTCCAGGATTAGAGACGTTCCTGAGCAGGTTGAAAGTCAAAAGCCATCTGATCAAAGCGGCTTGTCTCTGTCACGTGATACTCTTGGAACTGAAAATTTGTTCGTGCAGCCGAATATTTCTGATAGACGAGTGAGAAACCCAGAGGATACAAATACTTTGACAAGTGATGATGACGACGACCGCATGACCCTTGCATGCTTTCTGGGAAAGAAACCCAAAAATGTGTGTCAACCGGCTAAACGAAATGGGGTATACTCTTCCAAATTCAAAACAGGATCTGTATTACTAAATGAAGAACATTGTGCAAGCATCATGTCTGATGACAGTGGACCGTCAATGTCAAAGCATGTTGAAGAGGACACTTTTTTACATGGTTGTGTTGCTGAACCAATGGATATCATTGTGGAAGAAAAGGATGATGAGCTTTTGACTTCCTTCGTGCAAAACAGGCCAAGGAGGGAGCGAAAACGTCCCACATGCAACATTGGAGTGATTTCAGGTGAACTTCCCTCTTATTCTTCGGAGTAA 3105 0.4396 MTPRVDDFENDNLSSTDDDDDDGFKEDMAALSRACMIVVPGADDNSAAEDDVRSVDPQIDAGTAIVPVGTDSDSDDQDDLECLKRVQSLYQPLSVLPPLEPSAAVSDDDDEFDDLETVRAIMKRFGNYNEGLREGGMEMLVEGDQTSSLGCEDDIANGSIRYESDGGELCPVSQDPNEAATEELIENIEMQLSEFVESSEPDGWESSRLPQKRLSCPPVVQCFIDAIKKNRDMQRFLRSKLVELEAKIDENKKIRNRIKILKDFQASCTRRTGNALSLKKDPRAQLISAKKSSASKKSKKHKKASAMCYGPEENSHVANYRMVLERFPLSLDRKKWSKAERDSLLKGIKQQFQEMVLQLSLSVDRTSSEGLLGDADDMDDIIASVKDLEVTPERIRNFLPKVNWDLIASMYVGGHTGAECASSKSSRSTHHAGGVVHDMIFNMVVLSMSVVVVITDVGYVDRRIVWLNYEDPMINHGPWTKEEDRSLLLIVQDAGIRNWFNIAAALGTNRTPFQCLSRFQRSLNPSMLNSEWTEEEDSQLCSAVAYFGDGNWQYVASVLERRTGTQCSNRWKKSLCPEKKGSFTQEEDIRLTVAVMLFGRKWNQIAKYVPGRIQSQCRDRYLNSLDPSLKWGGWTEEEDLRLETAIAKHGYCWSKIAEEVPPRTDSQCRKRWKVLCPEQVPLLQEARKKQRSIIGSNFVDRESDRPTITLNDFLPILALAPKSDVGASNLRKKRKSSNVTKKMSSRKRAKRTRRCTKEVQDTEVYNEDEFYPVSACSKLPKNKRRSERHAKSSRNGPQESVDISRSDKVKTCNEGSGTQSTIAYSENQDPDSMTLACFIRKKSNEVLSSFTKTLSQTSFSRIRDVPEQVESQKPSDQSGLSLSRDTLGTENLFVQPNISDRRVRNPEDTNTLTSDDDDDRMTLACFLGKKPKNVCQPAKRNGVYSSKFKTGSVLLNEEHCASIMSDDSGPSMSKHVEEDTFLHGCVAEPMDIIVEEKDDELLTSFVQNRPRRERKRPTCNIGVISGELPSYSSE 1034
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02816 1034 SUPERFAMILY Homeodomain-like 527 621 IPR009057 -
Spst4g02816 1034 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 465 926 - -
Spst4g02816 1034 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 626 680 IPR017930 -
Spst4g02816 1034 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 532 579 IPR017930 -
Spst4g02816 1034 MobiDBLite consensus disorder prediction 863 887 - -
Spst4g02816 1034 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 471 527 IPR017930 -
Spst4g02816 1034 Gene3D - 530 579 - -
Spst4g02816 1034 ProSiteProfiles Myb-like domain profile. 579 625 IPR001005 -
Spst4g02816 1034 MobiDBLite consensus disorder prediction 779 825 - -
Spst4g02816 1034 SUPERFAMILY Homeodomain-like 605 677 IPR009057 -
Spst4g02816 1034 Gene3D - 633 679 - -
Spst4g02816 1034 MobiDBLite consensus disorder prediction 791 809 - -
Spst4g02816 1034 Pfam Myb-like DNA-binding domain 479 540 - -
Spst4g02816 1034 CDD SANT 478 523 IPR001005 -
Spst4g02816 1034 ProSiteProfiles Myb-like domain profile. 524 575 IPR001005 -
Spst4g02816 1034 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 580 625 IPR017930 -
Spst4g02816 1034 SUPERFAMILY Homeodomain-like 466 520 IPR009057 -
Spst4g02816 1034 ProSiteProfiles Myb-like domain profile. 626 676 IPR001005 -
Spst4g02816 1034 MobiDBLite consensus disorder prediction 1 27 - -
Spst4g02816 1034 CDD SANT 634 675 IPR001005 -
Spst4g02816 1034 MobiDBLite consensus disorder prediction 734 753 - -
Spst4g02816 1034 ProSiteProfiles Myb-like domain profile. 471 523 IPR001005 -
Spst4g02816 1034 CDD SANT 582 625 IPR001005 -
Spst4g02816 1034 CDD SANT 531 575 IPR001005 -
Spst4g02816 1034 Pfam Myb-like DNA-binding domain 633 674 IPR001005 -
Spst4g02816 1034 Pfam Myb-like DNA-binding domain 580 623 IPR001005 -
Spst4g02816 1034 Gene3D - 472 523 - -
Spst4g02816 1034 SMART sant 528 577 IPR001005 -
Spst4g02816 1034 SMART sant 630 678 IPR001005 -
Spst4g02816 1034 SMART sant 475 525 IPR001005 -
Spst4g02816 1034 SMART sant 579 627 IPR001005 -
Spst4g02816 1034 MobiDBLite consensus disorder prediction 810 825 - -
Spst4g02816 1034 Gene3D - 580 631 - -
Spst4g02816 1034 ProSiteProfiles SANT domain profile. 634 677 IPR017884 -
Spst4g02816 1034 MobiDBLite consensus disorder prediction 726 758 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02816 Spst-Chr4 67858257 67868370 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02816 209 769 MYB-Related Transcription Factor Family AT3G18100 44.965 2.01e-159 485
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst4g02816 Myb_DNA-bind_6 9.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02816 K09422 - gmx:778073 1353.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g02816 4 67858257 67868370 Spst4g02816 4 67858257 67868370 ECH