Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02815 ATGGGCATTAAGGATCTACTGAGGTTCATGAAACCTTACATTGAACCTGTCCACATCAAGAAGTACGCTGGAAAGCGCGTGGGCATTGATGCGTATTCGTGGCTTCACAAAGGGGCTTATTCGTGCAGTATGGAGCTTTGTCTTGATTCTGATAGTGAAAGGAAGTGGCGATACATTGAATACTTTATGCATAGAGTGAACTTGCTTCGCTTCTATAAAATAACTCCGGTAGTTGTTTTTGATGGCAACAATGTTCCTTGCAAGGCAGCAACTGAGGAAGAGAGAAATAGAAAAAGGAGGACTAATCGAGAATTAGCATTAGCGAAGCTCAAAGAAGGGAATGTTGGTGCAGCTTCAGAGCTCTTCCAGAGAGCAGTGAATATTACTCCTGTTATGGCACATAAGCTAATTCAGACCCTCAAATCAGAGAAAATTGAGTTCGTTGTTGCTCCATATGAAGCAGATGCCCAGTTAGCGTACTTGTCTCACCTTGGAGTAGAAAATGGTGGAGTTGCAGCAGTGATCACAGAAGATAGTGATCTAATAGCATATGGCTGTCCAGATATTATTTTTAAGATGGACCGTCATGGGAATGGTGAAAGAATTGAGTTAGAGAAGATTTTTTCTGCTGAGTCTGTCAGACCTTCATTTCGGAGTTTCAATATGAAACTCTTTACAGGTATGTGTGTCTTAGCTGGCTGTGATTTTCTTCCATCTGTACCAGGAATTGGCATTGCTCGAGCTCATGCTTTGGTTTCCAAGTATCGGAACCTAGATCGAATATTGTCTGTTCTTAAGCTCGAGAAAGGTGACCAAATGCCTGAAGATTATGCCAAAAACTTTCAAGAGGCTGTAGCAGTTTTTCAGCATGCTCGCATATATGATACCAATGCTAGAGAGCTTAAGCACTTGAAGCCTCTTCCACAAAATTTTCTTCAGTCACTTGATGGGAAACTCGATTTCTTGGGCCCAGAAATTCCCCCATCTATAGTCAAAGCAGTAGCTGAAGGAAATTTGAATCCATCAACTAAGAAAGCTTTTGATAAGTCTGAATGTTCTAGATTTCCTCTACATTCAACTGATCTCCAAAGCATTGATAAAGTCCAGAAACCTGAACTTCCTGCTCCATCTAGACTGAAGAATAGTTTTTCAATCATTGCCTCCCAATACACCAGAGAAAATAGTATAGGCAAGTTATTTAAATTGGAGATGCTCACAACATCTACCAATACATTGCTAATGACAAGGGTCTCAGATGAAGACAAGTATTCGAATGAAGCATTGCCACTTGAGAAACTAATCATGCCATTGGGAACAATTGGAACGGAAGAAAAGATCATTATACCTCTTAACACTCCTTTGAAGGTTCCTGACAACAATCCATTCAGGATTAGAAAAAATGAGGAAACATGTCAAAGAAAGGAGATTTTTGTTGCAAGCAGCATGGAATGTACTGACTTGTGCATGTCTCCGGATAACTTCCAAGAAGAGGGGTCTGATGAGAATCTCTCAAGGAAAAGGAAATTTCAGAACATTTTCTCAGATAAAGTTGAAGCCACTGATGAACTGGTTTCAGGAGTAACTGAAGCAGAAAAATCTGATGTTGTATGCATGACAATGGATTCGCCAGAAAGTGTAAGTTCTGAGACCAAGAGAATTGCTGATTTGAAAGGAAGAAGTCAAATTTATCAGCTGAACACTGTCAAGAATAGAGTTGCCAAAAAGTAA 1728 0.4005 MGIKDLLRFMKPYIEPVHIKKYAGKRVGIDAYSWLHKGAYSCSMELCLDSDSERKWRYIEYFMHRVNLLRFYKITPVVVFDGNNVPCKAATEEERNRKRRTNRELALAKLKEGNVGAASELFQRAVNITPVMAHKLIQTLKSEKIEFVVAPYEADAQLAYLSHLGVENGGVAAVITEDSDLIAYGCPDIIFKMDRHGNGERIELEKIFSAESVRPSFRSFNMKLFTGMCVLAGCDFLPSVPGIGIARAHALVSKYRNLDRILSVLKLEKGDQMPEDYAKNFQEAVAVFQHARIYDTNARELKHLKPLPQNFLQSLDGKLDFLGPEIPPSIVKAVAEGNLNPSTKKAFDKSECSRFPLHSTDLQSIDKVQKPELPAPSRLKNSFSIIASQYTRENSIGKLFKLEMLTTSTNTLLMTRVSDEDKYSNEALPLEKLIMPLGTIGTEEKIIIPLNTPLKVPDNNPFRIRKNEETCQRKEIFVASSMECTDLCMSPDNFQEEGSDENLSRKRKFQNIFSDKVEATDELVSGVTEAEKSDVVCMTMDSPESVSSETKRIADLKGRSQIYQLNTVKNRVAKK 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02815 575 Gene3D - 1 214 - -
Spst4g02815 575 SMART xpgineu 141 213 IPR006086 GO:0004518
Spst4g02815 575 FunFam Exonuclease 1, putative 1 214 - -
Spst4g02815 575 SUPERFAMILY PIN domain-like 2 235 IPR029060 -
Spst4g02815 575 Gene3D - 218 291 - -
Spst4g02815 575 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 220 348 IPR036279 -
Spst4g02815 575 SMART xpgn3 1 102 IPR006085 GO:0004518
Spst4g02815 575 SMART HhH_4 222 255 IPR008918 GO:0003677|GO:0003824
Spst4g02815 575 CDD H3TH_FEN1-like 225 295 - -
Spst4g02815 575 FunFam exonuclease 1 218 291 - -
Spst4g02815 575 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 450 IPR006084 -
Spst4g02815 575 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 76 95 IPR006084 -
Spst4g02815 575 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 140 157 IPR006084 -
Spst4g02815 575 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 225 240 IPR006084 -
Spst4g02815 575 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Spst4g02815 575 CDD PIN_EXO1 1 208 IPR044752 GO:0046872
Spst4g02815 575 Pfam XPG I-region 144 235 IPR006086 GO:0004518
Spst4g02815 575 Pfam XPG N-terminal domain 1 100 IPR006085 GO:0004518
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02815 1 315 Core DNA Replication Machinery Family AT5G26680 24.620 1.69e-14 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02815 K10746 - gmx:100817932 892.108