Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02793 ATGAATTGCATCGAAGCTACAGCTAGCAAGGATGTTTGGTGTGGCCCTGGAATTGGGTTTTCAACTGATGCTGCTGCTTCTGCATCCATGGATTGTGCTGTGGCTAGGAAGAATGTGTCTGCAAGAGGAAACCTTGATGTGGTGGAGAGGGAGAGTTCATCTTACTTTGGAAGGCGCCTTGTAAATTCAGAAAGCTTCTCTTTTCTGAATGATGAATTTGATATCTTCACAACTCGTCCTGGTTTAGACACAACTGCTAGATTTCCACGTCCTTCTCCGGATGATCTCGCTGAGATAATGATAATGCGAGGAAGAATGATAATGGGGGCACGATTAAACTCACACGACCGATTCAGAGATTGGAGACTTGATGTTGATAACATGTCATACGAGCAATTGCTTGAGCTGGGTGAGAGAATAGGTCATGTCAGCACTGGGCTCAAAGAAGATGAGATGAGACTCAACATAAGGAAAGTTAAACTTTCAAGTTCAAATGAGGCAGCAAAGCATCCAGTAGACAAAAATTGCAGTGTTTGTCAGGAGGAGTATGAACCAAATGATGAACTGGGGAGATTGAAGTGTGACCACAGCTATCATTTTCAGTGTATAAAACAGTGGCTTGTGCATAAAAACTTCTGCCCAGTTTGTAAGCAAGAAGTTGTGGTTCGACACTAA 675 0.4296 MNCIEATASKDVWCGPGIGFSTDAAASASMDCAVARKNVSARGNLDVVERESSSYFGRRLVNSESFSFLNDEFDIFTTRPGLDTTARFPRPSPDDLAEIMIMRGRMIMGARLNSHDRFRDWRLDVDNMSYEQLLELGERIGHVSTGLKEDEMRLNIRKVKLSSSNEAAKHPVDKNCSVCQEEYEPNDELGRLKCDHSYHFQCIKQWLVHKNFCPVCKQEVVVRH 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02793 224 FunFam E3 ubiquitin-protein ligase rnf12-A 143 222 - -
Spst4g02793 224 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 140 222 IPR013083 -
Spst4g02793 224 ProSiteProfiles Zinc finger RING-type profile. 176 217 IPR001841 -
Spst4g02793 224 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 78 220 IPR045191 GO:0061630
Spst4g02793 224 Pfam Ring finger domain 175 217 IPR001841 -
Spst4g02793 224 SUPERFAMILY RING/U-box 168 222 - -
Spst4g02793 224 SMART ring_2 176 216 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02793 Spst-Chr4 67643231 67648408 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02793 106 221 C3H Transcription Factor Family AT2G15530 50.000 1.04e-32 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02793 - - gmx:100807785 343.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g02793 4 67643231 67648408 Spst4g02793 4 67643231 67648408 ECH