Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02781 ATGAAGGGTGACTTGAAAATTATGGGTTTGAGTCTTGAGGTTGACAATTATGCAGACTACGATGAGGCTTCTGAGGAACTGCAAGAAAGTGTGAGAATGGGTGATGAGCATGATGATTTCCACAACACTCTCCTTCCCTTCCTACTCACCGTCTCTTGCTTGTTGCTAACCTCTTTCCCACACTCCCACTCTCAACCACCCCCACCACCACCACAACGCACTTGCTCTCACCAGTCATACGCGTGCAGCATAAACGTTTCCGCCATCTTCTATCCTTTCTGGGAACGCGCCCCACCATGTAGCGACGGTGACGAATCCCTGCTCTACTGCGGTGCTTCTTATGGTAATAATCCTCCAATCGAATCTCCATATTTCACAGTGAAGGAGATCAACGACGCCCATCACACCATGAAAGTGATGCTAACATACCCTGTCAAGGATGTTTGTTCTCCGGAATTTGTTCCCACTTACCAGAATTTGAATAACACTCTGTTCCAGTATTCCGCGTCTGTGCACAACATCACCACATTCTTCGATGGTTGTTCTGATCACATCCCAAATTTCCCTTCAAACCGCAAATTTGAGTGCGAGAATGTTGCGCATTATTTTGAGGAGAGAGACAAGGAGGAAGAGATGCTCCAGAAATATCCGAAGCTTAGGGATTGCAAGCAACGTTTGCTAGTGCCCACTGCCGCTCCTCTGGAGCATTATGTTTACGGTGATGAAGGATATGATGTTCTGAGAGAAGCTATCAGTGATGGTTTTGAGGTGTACTATGATGTTCCTCAACATTGCAAACGATGCAACGAAACGGACGGAAGTTGCTGGAACGGTGGTATTGGTGAATATGTAGTTTCATGCAAGTATTGCTCAAATGAACACTGTTCTTCTCCCGCCGAAAATAGTTTCGATGACAATTACGTTGTTGACCAGATGACTTTGAGAAAAACTATAGTAGTTGACTGCACATTTTTCCAAGTCTTGCTGAGATGGTCCCCACAAGTATTATTAGGTGGTTCCTTCTTTACACCTGCACTTCCATCGTCCAGCTTTGACCCTGCCTGCACACCTAAAAGTTGTGGAAATGGCCCATCCATTAAGTATCCTTTCTGGATTCCTGATGAACAGGGATCATTTTGTGGCTATCCCTCCTTTGAGATCACTTGCTTGGACAAAAATCCAATTCTCAGAACTTCTAGTTATGATTTTCTGATGAAAGATATCTCTTACTCTAACTCCTCATTTACTGTGGCCAACATAGCTTTCTATGAGGACAATTGTCCAGTTCCCTTATATAATTACAGCTTTGATCAAACTCCATTTACCTACAGTTCAGAAAATTGGAATCTCTCTTTCTTCTACAACTGTACCACAGAACCCATAGATTACCCCACTTACGAAGTAGATTGTGCTAAAAATGCTTCACATTATTCTTTTGGGGTTTTTCACAAGGAGGCACTAGAGCACAGAAACTATTCCTTGAACGAGTGTCAGTTTATGGTTAATGTGCCATTTTACAAGAACGCTGCTGTTAATTTCACTAGCTTATTGAGAATGAATTACATTGAGATTTTGAAGATGGGCTTTCTTTTGAATTGGACTGCACCTGATTGCCAGTACTGTGAGACAAGTGGTGGACGTTGTGGATTTGATAGCAATCAGTTCCTCTGCTTCTGCAAGGATAAGTCCTACTTAAAAACTTGTGGTAGTGGCACACTTAATTTGCCAAGGAAAATCCTTATAGGTGTTGGTTCTGGTGTGGTGGGAGCACTTTTGGTGGGCATTTGCGGCTATCTCTATATTCGTAGAAGAAAGAATAGTTATGTAATGTCATATATACAATCTCGGAGCCTCTCTTCTGATCCATCTTCAAAAGACACTGAGAAGGGAACTCAAAGCTTCACTCGCAGCATTTTACCCGGAGTGCCCCACTTCTCCTATGAAGAACTAGAAGAGGCCACAAATTACTTTGACTCATCTAAAGAACTAGGAGAAGGAGGCTTTGGGACAGTGTATTTTGGAAAACTGCGAGATGGACGTTCTGTTGCAGTGAAGAGATTGTATGAGAACAACTACAGGATAGTTGCACAGTTCATGAATGAAATTAAAATCCTAGCTGATTTAGCTCATCCAAATCTTGTGACATTATATGGATGCACCTCTCGCCACAGTCGTGAACTTCTGCTTGTATATGAGTACATTCCTAATGGAACTGTTGCTGATCATCTTCATGGTCAACGATCCAAACCTGTAACACTCCCTTGGCATATTAGAATCAATATTGCTGTTGAGACTGCAAGTGCACTGAAATTTCTTCATCTCAGAGGCATCATCCACAGAGATGTCAAAACCAACAATATTCTTCTTGACAGTAACTTCCGCGTCAAAGTGGCAGATTTTGGACTCTCACGTCTTTTCCCACAGCATGTCACTCATGTTTCAACAGCTCCACAAGGGACTCCAGGTTATGTGGATCCAGAGTACCACGAGTGCTACCAGCTTACTAACAAAAGTGATGTATATAGCTTTGGAGTGGTGCTGGTTGAGCTGATATCTTCCCTGCCTGCCGTTGATATCACAAGGCATAGACATGAAATCAATTTGGCCAACATGGCCATCAACAAGATTCACAATCAGGCACTACATGAGCTTGTGGACCCGAACCTTGGTTTTGAATCAGATTTGAAGGTAAGAAAAATGGTAAGTGCTGTGGCTGAGTTAGCATTTCAGTGCTTGCAGAGTTCCAAAGATATGAGACCTTCTATGGAAGAAGTGGCGGACACTCTCGAGGATATACGGAGTGATGGCAAAAACAAAAGTCAGCCTGAGGTAATGGATATCTCAAGCTCAGCTGATGATGTTGTGTTGCTGAAGAATGACCCTCCTCCGCCATCACCTGATTCTAATGCAGTGAGCAAGACAACAACACCAAATACTAGTGGATGA 2946 0.4304 MKGDLKIMGLSLEVDNYADYDEASEELQESVRMGDEHDDFHNTLLPFLLTVSCLLLTSFPHSHSQPPPPPPQRTCSHQSYACSINVSAIFYPFWERAPPCSDGDESLLYCGASYGNNPPIESPYFTVKEINDAHHTMKVMLTYPVKDVCSPEFVPTYQNLNNTLFQYSASVHNITTFFDGCSDHIPNFPSNRKFECENVAHYFEERDKEEEMLQKYPKLRDCKQRLLVPTAAPLEHYVYGDEGYDVLREAISDGFEVYYDVPQHCKRCNETDGSCWNGGIGEYVVSCKYCSNEHCSSPAENSFDDNYVVDQMTLRKTIVVDCTFFQVLLRWSPQVLLGGSFFTPALPSSSFDPACTPKSCGNGPSIKYPFWIPDEQGSFCGYPSFEITCLDKNPILRTSSYDFLMKDISYSNSSFTVANIAFYEDNCPVPLYNYSFDQTPFTYSSENWNLSFFYNCTTEPIDYPTYEVDCAKNASHYSFGVFHKEALEHRNYSLNECQFMVNVPFYKNAAVNFTSLLRMNYIEILKMGFLLNWTAPDCQYCETSGGRCGFDSNQFLCFCKDKSYLKTCGSGTLNLPRKILIGVGSGVVGALLVGICGYLYIRRRKNSYVMSYIQSRSLSSDPSSKDTEKGTQSFTRSILPGVPHFSYEELEEATNYFDSSKELGEGGFGTVYFGKLRDGRSVAVKRLYENNYRIVAQFMNEIKILADLAHPNLVTLYGCTSRHSRELLLVYEYIPNGTVADHLHGQRSKPVTLPWHIRINIAVETASALKFLHLRGIIHRDVKTNNILLDSNFRVKVADFGLSRLFPQHVTHVSTAPQGTPGYVDPEYHECYQLTNKSDVYSFGVVLVELISSLPAVDITRHRHEINLANMAINKIHNQALHELVDPNLGFESDLKVRKMVSAVAELAFQCLQSSKDMRPSMEEVADTLEDIRSDGKNKSQPEVMDISSSADDVVLLKNDPPPPSPDSNAVSKTTTPNTSG 981
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02781 981 ProSitePatterns Protein kinases ATP-binding region signature. 663 685 IPR017441 GO:0005524
Spst4g02781 981 Pfam Protein kinase domain 658 926 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst4g02781 981 ProSitePatterns Serine/Threonine protein kinases active-site signature. 777 789 IPR008271 GO:0004672|GO:0006468
Spst4g02781 981 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 346 979 IPR044652 GO:0004672
Spst4g02781 981 Gene3D Phosphorylase Kinase; domain 1 628 733 - -
Spst4g02781 981 SMART serkin_6 657 934 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst4g02781 981 Gene3D Transferase(Phosphotransferase) domain 1 734 955 - -
Spst4g02781 981 Pfam Wall-associated receptor kinase C-terminal 203 277 IPR032872 -
Spst4g02781 981 Pfam Wall-associated receptor kinase C-terminal 482 562 IPR032872 -
Spst4g02781 981 MobiDBLite consensus disorder prediction 932 981 - -
Spst4g02781 981 Pfam Wall-associated receptor kinase galacturonan-binding 355 418 IPR025287 GO:0030247
Spst4g02781 981 FunFam Wall-associated receptor kinase-like 20 734 942 - -
Spst4g02781 981 SUPERFAMILY Protein kinase-like (PK-like) 633 933 IPR011009 -
Spst4g02781 981 ProSiteProfiles Protein kinase domain profile. 657 932 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02781 Spst-Chr4 67576355 67583690 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02781 537 981 Receptor kinase-like Gene Family AT1G25390 52.735 2.80e-141 434
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Spst4g02781 Pkinase 1.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02781 - - cic:CICLE_v10018735mg 776.548