Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02757 ATGGCGACGCCACTGACGGGGCTGCAGCACATGGACGGCGGCGGCAGAGTGGCGGTGCTGTCGAATTCGGTGAGCAAGGTTGATCCCTCCGCCAATGGCGGCGGCGGCTTCGGTCGGTCGTTGTCGGAATCTCCAATTCTGATATTCTCGTTTTTCCACAAGGCGATTCGGAACGAGCTCGACACGCTGCACCGATTGGCGATGGCGTTCGCCACCGGAAACTGCTCCGACATCCAGCCCCTCTTCCAACGCTACCATTTCCTCAGATCGATGTACAGACACCACTCCAATGCTGAAGATGAGGTGATTTTTCCAGCTCTAGATATACGTGTAAAGAATGTAGCACAGACATATTCCCTTGAACACCAGGGTGAAAGTGAAATTTTTGAGCATCTATTTGATCTGTTAAACTCTTCCATCGATAATGATGAAAGTTTCCCAAAGGAGTTAGCATCCTGCACAGGAGCTCTGCAGACATCAGTTAGTCAACACATGGCTAAGGAAGAGGAGCAGGTATTTCCTCTGCTTCTTGAGAAGTTCTCCCTTGAGGAGCAGGCGTCTTTAGTTTGGCAGTTTCTATGTAGTATTCCAGTGAATATGATGACAGAATTTCTTCCATGGCTTTCAGCATCTATATCAACTGATGAATCTCAGGATTTGCGGAATTGTTTAAGCAAGATAGTGCCAGAGGAAAAGCTCCTTCAAAAGGTTATTTTCACCTGGATGGAAGGGAAAACTAGTGCTAACGCAGTTGAAAATTGTGTAGATCGATCTCAGGTGCGATGTAGTCCTAATCCTTTAACCCATCAGAATGGGAAATGTGCATGTGAGTCTACAACAAGTGGGAAAAGGAAATATTCTGCATCTATCATAGATGTTTCTGATACCATGAGAACACATCCTATAGATGAAATATTGTTCTGGCATAATGCAATAAAAAAAGAGTTAAATGAGATAGCAGTGCAGACCAGAAAGATACAACTCTCTGGAGATTTTACTAACCTGTCAGCTTTCAATGAAAGGTTGCAATTCATTGCTGAAGTTTGCATATTTCACAGTATTGCTGAGGACAAGGTTATTTTTCCAGCAGTAGATGGAAAATTTTCTTTCTTTAAAGAGCATGCTGAAGAAGAAAGCCAATTTAATGACTTTCGGTCTTTGATTGAAAGTATTCAAAGTGAAGGAGCAACGTCCAGTTCAGAAACTGAATTTTATTCAACATTGTGTTCACATGCTGATCATATATTGGAAACAATACAGAGGCATTTTCATAATGAAGAAGTTCAGGTTCTTCCTCTTGCTCGGAAGCACTTTAGCTTCAAAAGGCAACGTGAACTTCTCTATCAAAGCTTGTGCATGATGCCTTTGAAGTTGATTGAGCGTGTCCTACCATGGTTGACTAGTTCATTAACTGAAAATGAGGCACAGATGTTTTTGAAAAACATGCAATTGGCAGCTCCAGCAATAGATTCTGCTTTAGTCACACTTTTCTGTGGTTGGGCTTGCAAGGCCCGTAAAGATGGTCTGTGTTTGTCTTCAAGTTTGTCAGGCTGCTGTCCTGTTCAGAGAATTACTGATATTGAAGAAAATACTGTTCAATCTTCCTGTACTTCTGCTTCTGTAATGTCTGGTAGAGATTGCTCAGTATTAGTTCAATTAGATGGGACCCAACAAAGATCAGTCAAGAGAAACATATTGGAGGTGCACAAAGACGATGTCTCCAAAACATCAGAAAGTGAAATTATTCAGAAACAATGTTGTAGTTCCCGGTCTTGTTGTGTGCCAGCTTTAGGAGTCAGCAGGAACAATTTGGGGCTGGGTCCACTATCTACAACCAAGTCCTTACGCTCTTTGTCTTTCACTGCCTCGGCTCCATCCCTTAATTCTAGTCTTTTCGTGTGGGAAACTGACAACAGCTCATGTGATGTTGGTTCTACAGAAAGACCGATAGATACCATATTTAAGTTCCATAAAGCCATACGCAAAGACTTGGAGTATTTAGACATTGAATCTGGAAAGCTCTGTGATGGTGATGAAACAATTATTCGGCAATTTAGTGGAAGATTCCGGCTGTTGTGGGGTTTATATAGAGCTCACAGTAATGCTGAAGATGATATAGTATTTCCTGCACTTGAATCCAAAGAGACACTTCATAATGTGAGCCATTCGTACACACTGGATCATAAGCAGGAGGAAAAATTATTTGAAGATATTTCTTGTGTACTTTCTGAACTTTCTGTCCTTCATGAAGTCTTGCAGAGGACCCATATATCAGCAGATTTAAGTGAAATTTTTTTTGGAATTTCTGATGCCAATGATAGTGATAATATCAAGAAGTACAATGAGCTTGCAACTAAGCTTCAAGGAATGTGCAAATCTATTAGAGTAACCCTTGATCAACATATTTTTAGAGAAGAGCTTGAGCTCTGGCCACTGTTTGGAAAACATTTCACTGTGGAAGAACAAGACAAGATAGTGGGCCGGATAATTGGAACCACGGGTGCTGAAGTGCTCCAGTCAATGTTACCTTGGGTAACTTCCGCACTTACAGAGGATGAACAGAGCAAAATGATGGACACATGGAAACAGGCAACTAAAAACACCATGTTCAATGAATGGCTAAATGAATGCTTGAAAGAAAGTCCTGTATCTACAGCACAGGCAGAAACTTCAGAGCGTAGCACTTCTCAAAGAGGTGGAGATTATCAAGAAAGTTTGAACCTGAATGATCAGATGTTCAAGCCAGGTTGGAAAGACATTTTCCGGATGAATCAGAATGAACTTGAGTCAGAAATTCGGAAGGTCTACCGTGACTCAACTCTTGATCCAAGGAGAAAGGCGTATCTTGTGCAGAACCTAATGACAAGTCGCTGGATAGCTGCCCAACAGAAGTTACCTAAGGTTCCATCTGGGGAATCTACGAGTAAACAAATAGAAGGATGCTCACCATCATTTCGGGACCCAGAGAAAAAAATATTTGGTTGTGAGCACTATAAGCGAAATTGCAAGCTTCGAGCTGCGTGTTGCAGCAAGTTATTTACTTGCAGATTTTGTCATGACAATGCTAGCGATCACTCAATGGATAGAAAAGCAACAATGGAAATGATGTGTATGCATTGCCTGACTATACAACCTGTTGGGCCTGTATGCATGTCACCTTCGTGTAATGGACTTACAATGGCAAAGTACTATTGCAACATTTGCAAATTCTTTGATGATGAAAGGAATGTTTATCATTGCCCATATTGCAATATATGCCGCGTTGGACAAGGGCTTGGAATTGATTATTTTCATTGTATGAAGTGCAATTGTTGCCTGGGGATAAAATCAGCCTCTCATAAGTGCCTGGAGAAAGGTTTAGAAATGAACTGCCCAATTTGCTGTGATGACTTGTTCACATCAAGTGCAACAGTGAGAGCTTTACCATGTGGGCATTACATGCATTCATCTTGCTTTCAGGCATACACTTGTAGCCACTACACGTGTCCAATCTGCAGCAAATCATTGGGAGATATGGCGGTTTACTTTGGTATGCTTGATGCTTTATTGGCCGCTGAGGAGCTTCCTGAAGAGTACAGGGACCGCTATCAGGATATACTGTGCCATGACTGTGACCGAAAGGGCACTTCACGCTTCCATTGGCTATATCACAAATGTGGATGTTGTGGCTCATACAATACCCGGGTAATCAAGAGTGAGGCAACAAATTCTAGCTGCCTTTAG 3723 0.4198 MATPLTGLQHMDGGGRVAVLSNSVSKVDPSANGGGGFGRSLSESPILIFSFFHKAIRNELDTLHRLAMAFATGNCSDIQPLFQRYHFLRSMYRHHSNAEDEVIFPALDIRVKNVAQTYSLEHQGESEIFEHLFDLLNSSIDNDESFPKELASCTGALQTSVSQHMAKEEEQVFPLLLEKFSLEEQASLVWQFLCSIPVNMMTEFLPWLSASISTDESQDLRNCLSKIVPEEKLLQKVIFTWMEGKTSANAVENCVDRSQVRCSPNPLTHQNGKCACESTTSGKRKYSASIIDVSDTMRTHPIDEILFWHNAIKKELNEIAVQTRKIQLSGDFTNLSAFNERLQFIAEVCIFHSIAEDKVIFPAVDGKFSFFKEHAEEESQFNDFRSLIESIQSEGATSSSETEFYSTLCSHADHILETIQRHFHNEEVQVLPLARKHFSFKRQRELLYQSLCMMPLKLIERVLPWLTSSLTENEAQMFLKNMQLAAPAIDSALVTLFCGWACKARKDGLCLSSSLSGCCPVQRITDIEENTVQSSCTSASVMSGRDCSVLVQLDGTQQRSVKRNILEVHKDDVSKTSESEIIQKQCCSSRSCCVPALGVSRNNLGLGPLSTTKSLRSLSFTASAPSLNSSLFVWETDNSSCDVGSTERPIDTIFKFHKAIRKDLEYLDIESGKLCDGDETIIRQFSGRFRLLWGLYRAHSNAEDDIVFPALESKETLHNVSHSYTLDHKQEEKLFEDISCVLSELSVLHEVLQRTHISADLSEIFFGISDANDSDNIKKYNELATKLQGMCKSIRVTLDQHIFREELELWPLFGKHFTVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTEDEQSKMMDTWKQATKNTMFNEWLNECLKESPVSTAQAETSERSTSQRGGDYQESLNLNDQMFKPGWKDIFRMNQNELESEIRKVYRDSTLDPRRKAYLVQNLMTSRWIAAQQKLPKVPSGESTSKQIEGCSPSFRDPEKKIFGCEHYKRNCKLRAACCSKLFTCRFCHDNASDHSMDRKATMEMMCMHCLTIQPVGPVCMSPSCNGLTMAKYYCNICKFFDDERNVYHCPYCNICRVGQGLGIDYFHCMKCNCCLGIKSASHKCLEKGLEMNCPICCDDLFTSSATVRALPCGHYMHSSCFQAYTCSHYTCPICSKSLGDMAVYFGMLDALLAAEELPEEYRDRYQDILCHDCDRKGTSRFHWLYHKCGCCGSYNTRVIKSEATNSSCL 1240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02757 1240 Gene3D - 1195 1236 - -
Spst4g02757 1240 Gene3D nmb1532 protein domain like 645 888 - -
Spst4g02757 1240 Pfam Hemerythrin HHE cation binding domain 53 176 IPR012312 -
Spst4g02757 1240 Pfam Hemerythrin HHE cation binding domain 300 434 IPR012312 -
Spst4g02757 1240 Pfam Hemerythrin HHE cation binding domain 649 812 IPR012312 -
Spst4g02757 1240 SUPERFAMILY CHY zinc finger-like 988 1052 IPR037274 GO:0008270
Spst4g02757 1240 ProSiteProfiles Zinc finger RING-type profile. 1124 1166 IPR001841 -
Spst4g02757 1240 Pfam CHY zinc finger 995 1070 IPR008913 GO:0008270
Spst4g02757 1240 Gene3D nmb1532 protein domain like 44 194 - -
Spst4g02757 1240 Gene3D nmb1532 protein domain like 302 450 - -
Spst4g02757 1240 ProSiteProfiles Zinc finger CTCHY-type profile. 1060 1123 IPR017921 -
Spst4g02757 1240 MobiDBLite consensus disorder prediction 881 903 - -
Spst4g02757 1240 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1119 1168 IPR013083 -
Spst4g02757 1240 FunFam Zinc finger protein-related isoform 1 1119 1168 - -
Spst4g02757 1240 CDD Hr-like 651 811 - -
Spst4g02757 1240 CDD Hr-like 303 432 - -
Spst4g02757 1240 SMART ring_2 1124 1165 IPR001841 -
Spst4g02757 1240 Pfam Zinc-ribbon 1171 1228 IPR039512 -
Spst4g02757 1240 SUPERFAMILY RING/U-box 1121 1176 - -
Spst4g02757 1240 Pfam Ring finger domain 1123 1165 IPR001841 -
Spst4g02757 1240 SUPERFAMILY Zinc hairpin stack 1061 1117 IPR037275 -
Spst4g02757 1240 CDD Hr-like 48 174 - -
Spst4g02757 1240 ProSiteProfiles Zinc finger CHY-type profile. 988 1057 IPR008913 GO:0008270
Spst4g02757 1240 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 692 1236 - -
Spst4g02757 1240 CDD RING-H2_Pirh2-like 1123 1166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02757 Spst-Chr4 67366132 67376046 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02757 1 1239 C2H2 Transcription Factor Family AT3G18290 66.297 0.0 1688
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02757 K16276 - gmx:100791354 2344.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g00787 3 11409767 11418066 Spst4g02757 4 67366132 67376046 PCT