Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02751 ATGAGACTTGCCATGTCTATTCCTTCAAAGAGCATCATCTTTTCCAGTGAAGATGATAGTGAACTTAGAAGAGGGCCATGGAGTGTTGAGGAGGATGATCTTCTTGTCAATTACATAGCCAATCATGGAGAAGGGAAATGGAATTTGCTTGCTATACGTTCAGGATTAAGGAGGACAGGAAAGAGCTGCAGATTAAGGTGGCTAAATTATCTAAAACCAGATGTTAAACGAGGCAATTTAACCTTAGAAGAGCAGCTTTTGATTTTTGAACTCCACTCAAAGTGGGGTAACAGGTGGTCAAAAATTGCGCAACAGCTGCCAGGCAGAACAGATAATGAAATAAAGAACTATTGGAGAACAAGGATTCAGAAACAAGCAAGATATGTGAAACTTGAGACACACAGAACAACAACAGGATTTCTAGAATTTGTCAAGGGCCTACAGATGACAAGATGTCTTCACAGAGCACAAGAATCATCTCCTTCAACCATTTCACTCCAAGACCAAGAAATTCCTTTGCCTTTTGATGGTGCTTCTCATTATTCATTGTTTGGGATTTGGACAGCACCAACAACAGAACTCACTAGCCAGGGAGCTTTCAATCATTTGAATCAGCAAGAGCAGAACTCAGACTCTGAACACAACAATGCTTCAAGCATTTCCAATTCAGAATCAGTAATTATCCCAAATATGACTCAACCTTTGGGGTACAATGCTAGTCAAGTTCAGGCCTTAGACAACAGTGACTTTGGCATCTCTTTATGTGATGGCTACAGCATATATAACAATGCCTATGACATGAATGCCCTCAACCTGACAGCCACAATGGATGCTGAGAAAATGGAACTCCCACTCATTGGTTGCCAAATATCAGAAACCAACTGGCTAAACATGGAATTTGAATGTAGCACATGGATCAATGATGAATTATGGCAGTTTAGGAACATACAAAGATGA 957 0.4023 MRLAMSIPSKSIIFSSEDDSELRRGPWSVEEDDLLVNYIANHGEGKWNLLAIRSGLRRTGKSCRLRWLNYLKPDVKRGNLTLEEQLLIFELHSKWGNRWSKIAQQLPGRTDNEIKNYWRTRIQKQARYVKLETHRTTTGFLEFVKGLQMTRCLHRAQESSPSTISLQDQEIPLPFDGASHYSLFGIWTAPTTELTSQGAFNHLNQQEQNSDSEHNNASSISNSESVIIPNMTQPLGYNASQVQALDNSDFGISLCDGYSIYNNAYDMNALNLTATMDAEKMELPLIGCQISETNWLNMEFECSTWINDELWQFRNIQR 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02751 318 FunFam MYB transcription factor 80 122 - -
Spst4g02751 318 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 19 218 IPR044676 GO:0003700|GO:0006355|GO:0043565
Spst4g02751 318 Gene3D - 16 77 - -
Spst4g02751 318 Gene3D - 81 123 - -
Spst4g02751 318 ProSiteProfiles Myb-like domain profile. 72 122 IPR001005 -
Spst4g02751 318 Pfam Myb-like DNA-binding domain 77 120 IPR001005 -
Spst4g02751 318 Pfam Myb-like DNA-binding domain 24 71 IPR001005 -
Spst4g02751 318 CDD SANT 81 120 IPR001005 -
Spst4g02751 318 ProSiteProfiles Myb-like domain profile. 19 71 IPR001005 -
Spst4g02751 318 SMART sant 76 124 IPR001005 -
Spst4g02751 318 SMART sant 23 73 IPR001005 -
Spst4g02751 318 SUPERFAMILY Homeodomain-like 22 118 IPR009057 -
Spst4g02751 318 CDD SANT 26 71 IPR001005 -
Spst4g02751 318 FunFam Myb transcription factor 24 76 - -
Spst4g02751 318 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 19 75 IPR017930 -
Spst4g02751 318 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 76 126 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02751 Spst-Chr4 67334299 67335546 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02751 19 264 MYB Transcription Factor Family AT1G68320 44.402 6.85e-65 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst4g02751 Myb_DNA-binding 1.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02751 K09422 - gmx:100804227 479.174