Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02743 ATGTTATTGACCTTACTTTCAGGATCACTCTTTGGTTCTTCGCATATTTGTGGTGCACCATCTTCACCTTTTGGTAAACTCATCAGCTTCTTCAATTCAAGGGGTATATCAGAAGCTGGTGGTGGTTTCATCAATCTGATGGAGGAAAATCTGCCTCCTGGATTCAGGTTCCATCCTACAGACGAAGAACTCATCACATGTTATCTTACAAAGAAGGTTTCTGATTCTAGCTTCACATCCAAAGCTATAGCAGTTGTTGATCTCAACAAATCTGAACCTTGGGACCTACCAGGAAAGGCCTCCATGGGAGAAAAAGAGTGGTACTTCTTTAGCTTAAGAGACAGAAAGTATCCAACTGGACTTCGAACAAACCGAGCCACTGAATCAGGTTACTGGAAAACCACAGGGAAAGACAAGGAAATTTTTCGTACTGGTGTTTTGGTAGGAATGAAGAAAACCCTAGTTTTCTACAGGGGTAGAGCTCCAAAGGGAGAGAAAAGTAATTGGGTCATGCACGAGTATAGACTAGAAAACAAGCATCACTTAAGACCTTCCAAGGATGAATGGGTGGTTTGCAGGGTTTTCCAAAAGAGCTTACAAACGAAGAAACCACAGGAAACTCCCTCATCACAACCAGAGTCCCCATGTGACACAGCCTCAATGGTCAATGAATTTGGTGATGTTGAGCTTCCTAATCTAAATAGCATTGCAAATTCCTCAGGTGGACTCACTAACAACATTTCAGGACAGAGTTTTATGAATGCTGATCTCAGTAATAGTGTTAACACAAACATGAACTTGGCCATGAACTGGCCAGTTGCAAGTGAGGTTCAGGTTCCCTCTCTTCCATCCCTACCATGGCCTTCTGGGTTGCTAAATTCAAGTCTTTCTGTAAATTCATTGCTTCTCAAGGCATTACAAATTAGGAGTTATCAACAAAGAGAAGCAGCAGTAGCTACAGATCATTTTGCATCATATATGGCTCAAGGAGTTTCCCAAGTTGGAACTGACCTAAGTTCAAATCTCAGTGCCTCTTCTTCAAAAGTTCTAGAATGTATGCCACAGCAGCAACAACAACAGGAGCAACCATTCAATTTGGACTCCATTTGGTGA 1113 0.4196 MLLTLLSGSLFGSSHICGAPSSPFGKLISFFNSRGISEAGGGFINLMEENLPPGFRFHPTDEELITCYLTKKVSDSSFTSKAIAVVDLNKSEPWDLPGKASMGEKEWYFFSLRDRKYPTGLRTNRATESGYWKTTGKDKEIFRTGVLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLENKHHLRPSKDEWVVCRVFQKSLQTKKPQETPSSQPESPCDTASMVNEFGDVELPNLNSIANSSGGLTNNISGQSFMNADLSNSVNTNMNLAMNWPVASEVQVPSLPSLPWPSGLLNSSLSVNSLLLKALQIRSYQQREAAVATDHFASYMAQGVSQVGTDLSSNLSASSSKVLECMPQQQQQQEQPFNLDSIW 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02743 370 Gene3D NAC domain 60 201 IPR036093 GO:0003677|GO:0006355
Spst4g02743 370 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 47 281 - -
Spst4g02743 370 SUPERFAMILY NAC domain 46 197 IPR036093 GO:0003677|GO:0006355
Spst4g02743 370 FunFam NAC domain-containing protein 100-like 60 201 - -
Spst4g02743 370 Pfam No apical meristem (NAM) protein 52 176 IPR003441 GO:0003677|GO:0006355
Spst4g02743 370 ProSiteProfiles NAC domain profile. 51 197 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02743 Spst-Chr4 67272549 67274733 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02743 47 370 NAC Transcription Factor Family AT3G18400 59.880 1.53e-115 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Spst4g02743 NAM 2.5e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02743 - - pvu:PHAVU_004G156700g 556.984