Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02739 ATGCGGTTCAGCTGCAATGGTTGCCGCGTCCTCCGCCGCGGCTGCACCGTGGAGTGCCCCATTCGAACCTCCCTTCAATGGATCGATTGCCCCCACTCTCAGTCCAACGCCACCCTCTTTCTCGCCAAATTCTATGGCCGTCAAGGCCTCCTCACCCTCCTCACCAACGCCCCCTCTCAACTCCAACCAGCTGTATTTAAATCTTTGCTTTACGAAGCTTGCGGTCGGATGGTGAACCCGGTTTTCGGCTCGACCGGGTTACTCTCAACCGGGAATTGGCACCTCTGTGAAGCCGCGGCCAAAGCCGTTCTGAGCGGTGCGCCGATTCAGCAAGCCCCTCTGGACGGCGTTGCGAGTCTGCAGCTCGAGGCTTGCGATATTCGACACGTGGCAAAGAGTCATAAATCGTGCGGCTCTGAGGCGCTCCACAGAGTGAAGTCACGCACCAGCAAGTTCAAGCGCCGCGCCGCGAAGCTAAAACCCGACTCTACCGTCGCTGAGTTGGGTGAAAGCTTGTTAGGCGAACAGCGATCGGTGAGTCATGACTCGGGATCTGGGTTGACTCGGGCGAGTGAGAACAAAATCGTTGGCGGAGAAGCCGACAGCAGCTGCAGCGAGAGTATCGACCCGGCTCGAGTTAATGAAGGAAAAATGGAGCTTCAATTAACTTTGGGGTGGGGTCCAGTGAAAAGATCAATGAACACGATGATGCCACGTGTAGGTCTCGATCTCTCTGGCTAA 741 0.5655 MRFSCNGCRVLRRGCTVECPIRTSLQWIDCPHSQSNATLFLAKFYGRQGLLTLLTNAPSQLQPAVFKSLLYEACGRMVNPVFGSTGLLSTGNWHLCEAAAKAVLSGAPIQQAPLDGVASLQLEACDIRHVAKSHKSCGSEALHRVKSRTSKFKRRAAKLKPDSTVAELGESLLGEQRSVSHDSGSGLTRASENKIVGGEADSSCSESIDPARVNEGKMELQLTLGWGPVKRSMNTMMPRVGLDLSG 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02739 246 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Spst4g02739 246 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 4 201 - -
Spst4g02739 246 MobiDBLite consensus disorder prediction 176 190 - -
Spst4g02739 246 Pfam Lateral organ boundaries (LOB) domain 4 103 IPR004883 -
Spst4g02739 246 MobiDBLite consensus disorder prediction 176 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02739 Spst-Chr4 67238418 67239797 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02739 1 236 AS2 family AT3G02550 43.600 3.57e-59 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Spst4g02739 LOB 4.2e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02739 - - vun:114181255 397.897