Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02737 ATGACTAACCAAATGAAAGAAGCAAGTGCCTTAGGAGCTAGAACTGCACGAGCATGCGAGAGCTGTCTAAAAGTAAGAGCACGATGGTATTGTGCAGCTGATGATGCTTTCCTATGCCATGGCTGTGACAACATAATTCACTCAGCAAACCAATTAGCAAGCAGGCACGAAAGGGTTAAGCTTCAAACTGCATCCTCTAAGGTCAACTACTCAGTGACCCCTCATCATAATAATAAGGTAGCATGGCACAGTGGATTCACTCGCAAGGCAAGAACCCCACGCCCCAACAACAACAAGCACTCATCGGTGCTGCAGCAACAACAACAAAAGCAAATACATGAACAAGAAGTGTTTTTCAATAACACTATGAGTCTTCCCCTTGTGCCAGAGCTTGGAAGTGAAGAATCATTGCTTAATGATGAGAGTGAGGAGCAACTATTGTGTCGCGTACCCGTGTTTGATGCTGAGCTTTGTAGTATATACAATGAAGTGAAGGACGAGGTTTTAGCTGGTGAAGAAGCCTTTGACTTGGAAAATTTTTCTTCCGAGTTTCTACCATCAGATATGGACCTTGCTGAGTTTGCTGCCGACGTGGAAAGCTTACTTGGAAACGGGGCTGATAAGGATTCATCTGAGGGCGTGAAAGGATCAGAACTTGTGCTTGATTGCAAAGAAGATGATAAAATGGTTGCATGTGTTGATGGACTTGGAGCCGAAGAGGCAATGGTGAAGGTCAAAGATGAAGAAGAACTTGATGTCGACACACCTTGCCATTTGGATTCAATTATTCTTGACATGAACAGCGAGGCCTTTAATTGGAATGATATTGTCGAGTCAGACTCACTTGGTCAGGAACAAGAAGAGGAGTTGAGTAAAGTGGGAACCAATAAGAAGGACATATTTTTGAGGCTAAACTATGAAGATGTTATTACTGCTTGGGCCAGTCATGGTTCTCCATGGACAACAGGAACCCCACCTAAGTTTAACTCTGATGATTGCTGGCCAGATTTCTTGGGTTTAAATGGTGGGGATGTTCAATGCTGTCATGGGGAACTGAGAAGCTTAAGAGGGCATGCAGATGGGGCAAGAGAAGCAAGAGTGTCAAGATACCGAGAGAAAAGAAGAACCCGTTTATTTGCAAAGAAGATAAGGTATGAAGTGAGGAAGTTGAATGCAGAGAAAAGACCTAGAATGAAAGGTCGATTTGTGAAGAGAACATCCTTCCTTGGAGCCACTGCTTTGCCGGCTTAG 1251 0.4388 MTNQMKEASALGARTARACESCLKVRARWYCAADDAFLCHGCDNIIHSANQLASRHERVKLQTASSKVNYSVTPHHNNKVAWHSGFTRKARTPRPNNNKHSSVLQQQQQKQIHEQEVFFNNTMSLPLVPELGSEESLLNDESEEQLLCRVPVFDAELCSIYNEVKDEVLAGEEAFDLENFSSEFLPSDMDLAEFAADVESLLGNGADKDSSEGVKGSELVLDCKEDDKMVACVDGLGAEEAMVKVKDEEELDVDTPCHLDSIILDMNSEAFNWNDIVESDSLGQEQEEELSKVGTNKKDIFLRLNYEDVITAWASHGSPWTTGTPPKFNSDDCWPDFLGLNGGDVQCCHGELRSLRGHADGAREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRTSFLGATALPA 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02737 416 Pfam CCT motif 363 405 IPR010402 GO:0005515
Spst4g02737 416 MobiDBLite consensus disorder prediction 90 107 - -
Spst4g02737 416 CDD Bbox1_BBX-like 18 59 - -
Spst4g02737 416 SMART bboxneu5 14 61 IPR000315 GO:0008270
Spst4g02737 416 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 8 407 - -
Spst4g02737 416 Pfam B-box zinc finger 16 61 IPR000315 GO:0008270
Spst4g02737 416 ProSiteProfiles CCT domain profile. 363 405 IPR010402 GO:0005515
Spst4g02737 416 ProSiteProfiles Zinc finger B-box type profile. 14 61 IPR000315 GO:0008270
Spst4g02737 416 MobiDBLite consensus disorder prediction 88 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02737 Spst-Chr4 67225037 67227389 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02737 8 405 C2C2-CO-like Transcription Factor Family AT1G25440 43.488 3.77e-93 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Spst4g02737 zf-B_box 2.9e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02737 - - gmx:100802113 652.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g00808 3 11549628 11551095 Spst4g02737 4 67225037 67227389 PCT