Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02735 ATGTGGGGCATTCTAAGACAAACTCAGCATCAAGGAATGAAATGTAAGAGAGGAAAAGAGAAGGTTCCTGCCAAAGAAGAGAACATAAAGGCAACTAGGAAAATTAGAATTGTGTATACTGACCCTGATGCCACAGATTACTCAAGTGAAGAAGATTCTAAGTTGTTGAGCAATGATTATCAGTTAAATGGTTGCTCAAAGAGGGTTGTCAAGGAAATTTTGGTTCCATGCATGCCAAGGAAATTGCAAGAAGAGAATTATTCACAAGATGTCAACTGTGAAAAGATCAAAGCAAGTCCAAGTCCATGCCATTTTTCAAGTAGGAGGATGAGGAAACCATCAAGCATGTACAAAGGTGTTCAACGTAGGAAATGGGGGAAATATGTGGCAGAAATTAGAGACCCTGTTCAAGGGGTCAGAGTGAGGCTTGGTACATTTGATACTGAAAAAGAGGCTGCTATGGCTTATGAGAGAAAGAAGAATGAGTTTGAAAGGCATTTGTTGGATTCGAGCAAAAGGGATGCAGTGACTTGTGACAGTTCCAAAGAAGTATTGTTTCATCCATCTCCATCGTCAGTGCTTGATGTCAGCACTACAAAAGCTCCACTAGATGTTAATGACCTTAATGATTCGGTCAAAGAAAATGTCAATGTGGAAAAAGTTGGTGAAGGAGGAGGCATTGATGTTGAACCAGTTAATAGTGAAGATAATTCAATCCAACGTTTGCTGGATGAGGCAGTTGTGCCATCACTGTTTGGTCACGGTGATCTCTATTTGGATGAAGTAGAGAAAGGGGGAATGCTGCTTGGGAATGACTTTTATAATTTCTTGGAAAATGACATGAAAGTTGGTTTTATGTGGAATGTGGAACATGGGGAAGGTACTGTCCTTCCTCCTTTAGACAGTGCTTTTGACGAGTTAGCTTGGATTGATGAAACTCTAAATTGGGAAAGCTCTTAA 960 0.401 MWGILRQTQHQGMKCKRGKEKVPAKEENIKATRKIRIVYTDPDATDYSSEEDSKLLSNDYQLNGCSKRVVKEILVPCMPRKLQEENYSQDVNCEKIKASPSPCHFSSRRMRKPSSMYKGVQRRKWGKYVAEIRDPVQGVRVRLGTFDTEKEAAMAYERKKNEFERHLLDSSKRDAVTCDSSKEVLFHPSPSSVLDVSTTKAPLDVNDLNDSVKENVNVEKVGEGGGIDVEPVNSEDNSIQRLLDEAVVPSLFGHGDLYLDEVEKGGMLLGNDFYNFLENDMKVGFMWNVEHGEGTVLPPLDSAFDELAWIDETLNWESS 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02735 319 ProSiteProfiles AP2/ERF domain profile. 116 163 IPR001471 GO:0003700|GO:0006355
Spst4g02735 319 SUPERFAMILY DNA-binding domain 115 163 IPR016177 GO:0003677
Spst4g02735 319 SMART rav1_2 116 170 IPR001471 GO:0003700|GO:0006355
Spst4g02735 319 PRINTS Ethylene responsive element binding protein signature 117 128 IPR001471 GO:0003700|GO:0006355
Spst4g02735 319 PRINTS Ethylene responsive element binding protein signature 139 155 IPR001471 GO:0003700|GO:0006355
Spst4g02735 319 CDD AP2 115 158 IPR001471 GO:0003700|GO:0006355
Spst4g02735 319 Gene3D AP2/ERF domain 116 170 IPR036955 GO:0003700|GO:0006355
Spst4g02735 319 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 32 170 - -
Spst4g02735 319 Pfam AP2 domain 117 166 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02735 Spst-Chr4 67211069 67212028 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02735 33 182 AP2-EREBP Transcription Factor Family AT1G68550 38.217 1.38e-18 83.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Spst4g02735 AP2 1e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02735 - - pvu:PHAVU_004G157600g 477.633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g02735 4 67211069 67212028 Spst4g02735 4 67211069 67212028 ECH
Spst4g02735 4 67211069 67212028 Spst3g00810 3 11557423 11557902 PCT