Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02709 ATGGCCTTGGACTCCCTTACAGGATTTGCTACATTGTTTGTAGATGCTCCTGTAGTGTCAACTCTGTCAGGATACCCCTTTTCATTTCCTGTTTTGCCTTGTAGGGAGGATCTCGTGCTTATGAGGGTAGTAGCTCACTTTTTTTCTGGTGTTCAAAGCCTTTCATCTAGTGCGCAAAGTACTCCTGAGAAAAATGGTCATTCAGATGATGCTTCAAGAAGTTCAGAACTTCTTCAGCAGTTCTTAAAACCTGGTCCTAAGAAGGAACTTCTACGGACTTGCTTTGATAAGGACAAAAAGAACATTTCTTCGAAAGGCAGGATGATTGAGACTAAGTCAACCAATAAGATTGTCAAGAAACAGGACTCCAAAAAAGTTTCTGGTGTCAGCAATCAGTCTTCCCGGAAGCAACATCGCAAAGGAGAAAATCCTGTGCGTTTTGTACCAGTTCCTGACCCCCCTAGTGATTTTGGACATTCAAACTCCTGGATTTGTAAGAATTCTGCATGTCGAGCAGTTCTCTCTAAAGATGACACATTTTGTAGAAGGTGCTCTTGCTGTATTTGCCACCTTTTTGATGATAACAAGGACCCTAGCCTTTGGTTGGTATGCACATGTGAATCTGCTCAAGGGGACTCCTGTGGATTGTCTTGCCATATTGAGTGTGCTCTTCAACACGAAAAAGTGGGAGTTGTTGATCATGGACAACTGATGCAACTAGATGGTGGTTATTGTTGTGCATCCTGCGGTAAAGTTACTGGGATACTTGGATGTTGGAAGAAGCAGCTAAGCATAGCAAAAGATGCTAGACGTGTTGATGTACTATGTTTCAGGATATATTTGAGCTACAGGCTTTTGGATGGTACTTCAAGATTTAAAGAATTGCATGAAATGGTAAAAGAGGCAAAGGCTAAACTAGAAACTGAAGTTGGTCCAGTTAATGGAGTTTCTGCCAAGATGGCACGTGGGATTGTCAGCAGACTCCCTATTGCTAGTGATGTTCAGAAACTCTGCTCTCTTGCTATTGAGAAAGCTAACGAGTGGTTGGCCACTGTTCCCAATGTAAATCCAGAATCCAGAGAGGGTTCACTTCCCGCTGCCTGCAAGGTTGTTTTTGAAGAGGTAACGGCTTCCTCAGTCAAAATAATTTTGATTGAAATGTCAAATGCATCTTCTGGGGGCATTAAGGGATACAAGCTCTGGTATTACAAGAGTAGGGAGGAATCACACACTAAAGATCCTGTTTGTGTGTTTCCCAAAGCTCAGAGAAGGATCCTGTTAACCAACCTCCAGCCTTGCACAGAATATACATTTCGGATTGTTTCTTTTACAGATATGGGTGACCTTGGTCATTCTGAGGCTAAATGTTTCACCAAGAGCGTTGAGATATTGGAAAAGAATTCATCTTCATCGGTTGCTGTGAATCAAAAAAAGGAGAACCTTCAAGCTGAATGTAATTCTTCTGGCTCCAAATTGGAGCCCAATCCCACAACGGCAGACTCTGGATTTAAGGTTCGAGACCTTGGGAAAATATTGCATCTTACTTGGGCTCAAGAACAAGGTAGCTTTGAGGGTTTTTGCTGTGCTGACAAAAGAAATTGCTGTGGGCAATGTGAAACTATCAAGCCTAGCAAACCACAAGAGCAGTTACCTTCAGTTTCGCGAGACCTCGATCTAAATGTTGTTTCAGTGCCTGATTTAAACGAAGAACTGACACCTCCGTTTGAGTCTTCCAGGGATGAAGATAATGGTTGTACTTTGCACCAGGCTGTTGAGGCAGATGATGATGCTGCTTCTCATGATTTAGACAAAAATTTAGCAAGATCACATGGTAGTGGGGGTTCCCAAACATGGAACCATGGACAAACAGGAGAAGTTCCAGCTGTTGACTCACGTGGAGACGCAAGTAGGAAAAGGATAGCAAGCACAAATGAAGAGACACATGATTGTGACAGCACTCTGATAAATGGCTCTCCTTTACGTCCATCTGATGGTCCATTCTCTTTAGATGAAAACTTTGAGTATTGTGTAAAAGTAATTCGCTGGCTAGAATGCCAGGGTCATATCAAGCAGGAATTTAGGTTGAAATTGCTGACATGGTTTAGTTTGAGGTCGACAGAGCAAGAACGTAGGGTGGTAAATACTTTCATTCAAACTCTGATTGATGATCCTAGTAGTTTGGCCGGGCAACTAGTGGACTCATTTTCTGACATTATATCCAACAAGAGGCCAAGAAATGGGTTCTGCAACAAGACTGTGACATCAACTTAA 2271 0.4245 MALDSLTGFATLFVDAPVVSTLSGYPFSFPVLPCREDLVLMRVVAHFFSGVQSLSSSAQSTPEKNGHSDDASRSSELLQQFLKPGPKKELLRTCFDKDKKNISSKGRMIETKSTNKIVKKQDSKKVSGVSNQSSRKQHRKGENPVRFVPVPDPPSDFGHSNSWICKNSACRAVLSKDDTFCRRCSCCICHLFDDNKDPSLWLVCTCESAQGDSCGLSCHIECALQHEKVGVVDHGQLMQLDGGYCCASCGKVTGILGCWKKQLSIAKDARRVDVLCFRIYLSYRLLDGTSRFKELHEMVKEAKAKLETEVGPVNGVSAKMARGIVSRLPIASDVQKLCSLAIEKANEWLATVPNVNPESREGSLPAACKVVFEEVTASSVKIILIEMSNASSGGIKGYKLWYYKSREESHTKDPVCVFPKAQRRILLTNLQPCTEYTFRIVSFTDMGDLGHSEAKCFTKSVEILEKNSSSSVAVNQKKENLQAECNSSGSKLEPNPTTADSGFKVRDLGKILHLTWAQEQGSFEGFCCADKRNCCGQCETIKPSKPQEQLPSVSRDLDLNVVSVPDLNEELTPPFESSRDEDNGCTLHQAVEADDDAASHDLDKNLARSHGSGGSQTWNHGQTGEVPAVDSRGDASRKRIASTNEETHDCDSTLINGSPLRPSDGPFSLDENFEYCVKVIRWLECQGHIKQEFRLKLLTWFSLRSTEQERRVVNTFIQTLIDDPSSLAGQLVDSFSDIISNKRPRNGFCNKTVTST 756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02709 756 PANTHER VIN3-LIKE PROTEIN 2-RELATED 53 751 IPR044514 GO:0010048|GO:0040029
Spst4g02709 756 MobiDBLite consensus disorder prediction 55 75 - -
Spst4g02709 756 ProSiteProfiles Fibronectin type-III domain profile. 366 463 IPR003961 GO:0005515
Spst4g02709 756 MobiDBLite consensus disorder prediction 609 624 - -
Spst4g02709 756 MobiDBLite consensus disorder prediction 105 123 - -
Spst4g02709 756 CDD FN3 369 448 IPR003961 GO:0005515
Spst4g02709 756 Pfam PHD - plant homeodomain finger protein 165 283 IPR032881 -
Spst4g02709 756 MobiDBLite consensus disorder prediction 105 147 - -
Spst4g02709 756 MobiDBLite consensus disorder prediction 604 661 - -
Spst4g02709 756 Pfam Fibronectin type III domain 369 450 IPR003961 GO:0005515
Spst4g02709 756 SUPERFAMILY Fibronectin type III 368 448 IPR036116 GO:0005515
Spst4g02709 756 Gene3D Immunoglobulins 351 462 IPR013783 -
Spst4g02709 756 MobiDBLite consensus disorder prediction 631 646 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02709 Spst-Chr4 66970660 66975659 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02709 161 747 PHD Gene Family AT3G24440 48.752 2.97e-179 524
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02709 - - gmx:100780157 1351.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g02709 4 66970660 66975659 Spst4g02709 4 66970660 66975659 ECH
Spst3g00827 3 11723231 11729936 Spst4g02709 4 66970660 66975659 PCT