Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02704 ATGTTAGGGGCATGTAATTTACTACGAGAGGTGTTTGATTTGACAATGGTCACCGACACAGAGAAGCACCTCCCAGATGCCGCATGTGAGATGAGGAAGAAAACCTATTCCTTCCACCTCTCACTCCCCCTTTCTCTCTTCCTGCTTCTACTCGCACACTCTCTGTGTGCCTCCCAAGGAATCTCCCACAATGGGCCTCTCACCGACGCCGAAGCCACCTACATCAAGCAGCGACAGCTTCTCTACTACAAAGACGAGTTCGGGGACAGAGGAGAAAAAGTAACCGTAGATCCCTCTTTCCGCTTCGAGAACAACCGTTTGAGAAACGCTTACATCGCCTTACAGGCATGGAAGCAAGCCATTCTTTCTGATCCCAAAAACCTCACGCTCAACTGGGTGGGGCCCAATGTCTGCAACTACACCTACGTATTTTGCGCTCCCGCTCTCGACAACCCTAAGATCCGCACCGTAGCCGGAATCGACCTCAACCACGGCGACATTGCCGGATATCTCCCCGAGGAGCTTGGCTTGCTCACCGACCTCGCACTCCTCCACATCAACACCAACCGCTTCTGCGGCACCGTTCCGCACAAGTTCGACAAACTCAAACTCCTCTTCGAGCTGGATCTCAGCAACAACCGCTTCGCCGGAAAGTTCCCCAACGTGGTACTGCGTCTCCCCCAGCTCAAGTTCCTAGATCTCAGGTTCAACGAATTCGAAGGCACGGTCCCCAAGGAGCTCTTCGACAAGGACCTCGACGCTATTTTCATTAACGACAATCGCTTCGTGTTTGACCTGCCGGAGAATTTCGGCAACTCGCCCGTGTCGGTGATCGTGCTGGCCAACAACCGATTCCACGGCTGCGTGCCGGCGGGAATCGGTAACATGAAGCGGCTGAACGAGATTATTCTGATGAACAACGCGTTCAGGTCGTGCTTCCCTGCGGAGATAGGGTTGCTGAAGAACTTGACGGTGTTCGATGTGAGCTTCAACCAGTTGTTAGGGCCTTTGCCTGAGGCCATTGGAGGTGCTGTGAGTTTGGAGCAGCTCAATGTGGCTCACAATTTACTCTCCGGGAAGATTCCTGAGAGCATTTGTAAGCTTCCCAATCTGCAAAACTTTACTTACTCTTACAACTTTTTCACTGGCGAGCCGCCACGGTGTCTCGCTTTGCCGGCCTTTGATGACCGCCGCAACTGCCTTCCCGCCAGGCCCTACCAGCGCTCCCCCGGACAATGTAAGTCGTTTTTGTCGCACCCTGTGTAA 1266 0.5348 MLGACNLLREVFDLTMVTDTEKHLPDAACEMRKKTYSFHLSLPLSLFLLLLAHSLCASQGISHNGPLTDAEATYIKQRQLLYYKDEFGDRGEKVTVDPSFRFENNRLRNAYIALQAWKQAILSDPKNLTLNWVGPNVCNYTYVFCAPALDNPKIRTVAGIDLNHGDIAGYLPEELGLLTDLALLHINTNRFCGTVPHKFDKLKLLFELDLSNNRFAGKFPNVVLRLPQLKFLDLRFNEFEGTVPKELFDKDLDAIFINDNRFVFDLPENFGNSPVSVIVLANNRFHGCVPAGIGNMKRLNEIILMNNAFRSCFPAEIGLLKNLTVFDVSFNQLLGPLPEAIGGAVSLEQLNVAHNLLSGKIPESICKLPNLQNFTYSYNFFTGEPPRCLALPAFDDRRNCLPARPYQRSPGQCKSFLSHPV 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02704 421 Pfam Leucine Rich Repeat 346 368 IPR001611 GO:0005515
Spst4g02704 421 Pfam Leucine rich repeat 181 238 IPR001611 GO:0005515
Spst4g02704 421 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 46 421 - -
Spst4g02704 421 SUPERFAMILY L domain-like 111 392 - -
Spst4g02704 421 Gene3D Ribonuclease Inhibitor 274 401 IPR032675 -
Spst4g02704 421 FunFam Leucine-rich repeat extensin-like protein 1 111 272 - -
Spst4g02704 421 Gene3D Ribonuclease Inhibitor 111 273 IPR032675 -
Spst4g02704 421 FunFam Leucine-rich repeat extensin-like protein 5 273 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02704 Spst-Chr4 66922530 66925035 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02704 51 420 Leucine-rich Repeat extension Gene Families AT3G24480 77.027 0.0 591
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02704 - - ccaj:109813452 694.501
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g02704 4 66922530 66925035 Spst4g02704 4 66922530 66925035 ECH