Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02685 ATGATGGAACACAACATCATCAGCAACACCAACTACGTGATCGCACCGTTTGTCATAAAAACCTACAACATGGTTAACGATCCCACCACTGATAAACTCATCACGTGGGGCCCAGCCAACAACAGTTTCATCGTCCTCGACCCCCTCGACTTCTCCCACTCCCTCCTCCCTGCTTTCTTCAAGCACAACAACTTCTCCAGCTTCGTTCGCCAACTCAACACCTATGGTTTCAGAAAGGTGGATCCGGATCGGTGGGAATTCGCGAACGAGTGGTTCCTGCGGGGGCAGAAGCATTTGTTGAGGAACATCGTGCGGCGGAAACACGGCGGAGGAAGGAACAACAATTTGCAGTCGCATTTGCATCCCCTGAAGTTGGACGAGTTGGACGACGAGGTCATGTTGATGGAGATAGCGAGGTTGAAGGAGGAGCAGAAAGCGTTGGATGAAGAGCTTAGAGGAATGAACAAGAGGTTAGAGACAACGGAAAAACGACCGCAGCAAATGATGGCCTTCCTGTCAAAGGTTGTCGAGGACCCGCAGGTTCTCTCTCGGATTCTCCGAGAAAGAGAAAAAAAACACCTCGGCGAGAAAAAGCGACGCCTCATTCCGCCGCCTCCGACGGCGGCGACCTCCTCCTCCTCCTCTTCCGGCATCAAGACCGAGTTCGATGAAGACGAAGGTAACAATATCATGTCTTCATCACCGGAGACGGGTTTGGAAATCGATAATAATAATAATATTATTATTTGTTCGCCGGCGACGGCGGGTTGTTGGGGGGAACAGGGATGTTACGGGTATAATTGCGGCTGCGTACCTGCTCCGTTGACTTTGGTAAGTCCGGCGGCGCCGGCGATGGGAGGAGGGTATTTGGGGCGTGGGGGTTTCTTTGGGGAAATGACGGCGGAGGGGAGTGCTCCGCCGCCTTATCCGTTTTCGCTCTTGGAAGGTGGGTTTTAG 957 0.5266 MMEHNIISNTNYVIAPFVIKTYNMVNDPTTDKLITWGPANNSFIVLDPLDFSHSLLPAFFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEWFLRGQKHLLRNIVRRKHGGGRNNNLQSHLHPLKLDELDDEVMLMEIARLKEEQKALDEELRGMNKRLETTEKRPQQMMAFLSKVVEDPQVLSRILREREKKHLGEKKRRLIPPPPTAATSSSSSSGIKTEFDEDEGNNIMSSSPETGLEIDNNNNIIICSPATAGCWGEQGCYGYNCGCVPAPLTLVSPAAPAMGGGYLGRGGFFGEMTAEGSAPPPYPFSLLEGGF 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02685 318 Gene3D - 9 107 IPR036388 -
Spst4g02685 318 ProSitePatterns HSF-type DNA-binding domain signature. 56 80 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst4g02685 318 PRINTS Heat shock factor (HSF) domain signature 55 67 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst4g02685 318 PRINTS Heat shock factor (HSF) domain signature 17 40 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst4g02685 318 PRINTS Heat shock factor (HSF) domain signature 68 80 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst4g02685 318 Pfam HSF-type DNA-binding 17 106 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst4g02685 318 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 14 224 IPR027725 -
Spst4g02685 318 SMART hsfneu3 13 106 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst4g02685 318 FunFam Heat stress transcription factor B-4 9 107 - -
Spst4g02685 318 MobiDBLite consensus disorder prediction 193 228 - -
Spst4g02685 318 SUPERFAMILY "Winged helix" DNA-binding domain 14 106 IPR036390 -
Spst4g02685 318 Coils Coil 137 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02685 Spst-Chr4 66776640 66778160 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02685 13 318 HSF AT3G24520 44.776 7.29e-84 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Spst4g02685 HSF_DNA-bind 5e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02685 K09419 - gmx:100794896 538.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g02685 4 66776640 66778160 Spst4g02685 4 66776640 66778160 ECH