Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02672 ATGGGTGAAGGCGAAGGAGGCGATTACGCTCCGAAGAATGCGTCGTCGTCAGAAGTCGTTGTGCCGATGGTAGTGTCTACGGCGGCGCTGGAAGTTCCGGCGAAGAAGCTGGCGCGGCAGCTCGATTTTACGGGCGCGCCGGAGCATCAGCAGTCGCAGTCACAACCACAGCAGCAGCCGGTGGCGGTGTTGCCGTTGCCCTTGCCACCGCAGGTGCCTCATGGGAGGGTTGGTGAAGTTTTGATCGCGTGCTTCTTAAGAACACTTGAAATTCTGTTGATTGGAGGCTTGTTTGAGCTTTCAATGCATGTGGATTACCATGTTTCTTCTTCCACTGGGAATAAGATGGTAGGAGGTTTAAATTGTTTTGAGTATCTCACATTGGTAAGGAACGTTAGAACTGTAGGCTTTCTTGCTAACACAATTTATGAAGTTGTTTATAGTAATTTCAATTCGGGTTGGGATACGGTTATAAGACAATTGGAGGTATTAGAGAGGATTGGCGCCTTTGAGGAAAATATGGTAGAATCACACATAAGATGGTTGAGAAATGAGAGAAGACCAATAGGAGCAGTAGTTAGAAGCATTAATCCGATGGAAGATAGACCAATGATTAGAGATAATGGTAAACAAAGAATTAAAAGGGATCTAGAATTAGATGGTCTAGAATTGAGGATGGGCCCTGGTGCGACGCCAAATTTGCGTCTTGGTGACCAATTGGTCATGGGTTCAAATCTGGAAAAAACCTCTTTGCATATATGCAAGGGTAAGGTTGCATTCCATGACCCTCGCCCTTGCCTTTGTATAATGGGGAGCCTTTTAGCACTGGGGAAACCAGAATCTCCTAAATCAAGATCAAGACCTAACTTTGAAATGAAAGAAGCTACTCCCAAGAAGCAAAAACAGTGCAATTGTAAACACTCTAAATGCTTAAAGCTGTATTGTGAATGTTTTGCATCAGGAATATACTGTGATGGTTGCAACTGTGTAAATTGTTTCAACAATGTTGAAAATGAAGCTGCTAGACGAGAAGCTGTTGAAGCTACATTGGAGCGCAATCCAAATGCATTTAGGCCCAAAATTGCTAGTAGCCCTCATGGAACACGTGATAACAGGGAGGAGGCTGGGGAAGTTTTAATATTAGGAAAACATAACAAGGGATGCCATTGTAAAAAATCTGGATGCCTCAAGAAGTACTGTGAATGCTTCCAAGCCAACATTCTTTGTTCTGAAAATTGTAAATGCATGGACTGCAAGAATTTTGAGGGAAGTGAAGAGAGACAGGCTTTGTTTCATGGAGATCAAAATAACATGGCATATATTCAGCAAGCGGCAAATGCTGCCATAACTGGAGCTATTGGTTCCTCTGGCTTTTCATCGCCTCCAGTATCCAAGAAAAGAAAAGGTCAGGAACTCTTCTTTTGGCCTACAACCAAGGATCCTTCCATTAGCAAGTTGGGACAACAGGTAAACCATGTCAGAGGTCCAGCACCTTCGTCATCTCTGTCTCCTGTCTCAGGTGCTCGTGTTGGAACTGCATCGTTAGGTCCTTCAAAATTTATGTACAGGTCACTTTTAGCAGACATTATTCAACCACAGCACCTCAAGGAGCTATCCTCAGTTCTGGTGCTTGTATCTGGACAAGCTGCAAAGACAATTACAGACCAGAAAATTTTAATGGAAAAGCATACAGAAGATCAGACAGAAACTTCCCTTGCTTCGTCAAGTCAAGAGCAGTTACCAAGTCAAAAGGAAGGTCATGTTGAGAAGACTGTGGCTGATGATTGTTCGAGTGCAAACCAAACAGATAAAATCAGCCCAGATGATTCTAGTTCAGATGGTGCTGATGTCCCAAAAGGGAGGCCAATGTCTCCTGGGACTTTAGCCTTGATGTGTGATGAGCAAGATACAATGTTCATGACAGCCGCCACCCCGGTTGGGCCAATGGCGCATGCTTGCAATACATCTTCACAATTTCCTTATGGACAAGGAATGACAGAGGTCTATGCTGAGCAAGAAAGGATTGTATTAACAAAGTTTAGGGATTTTCTCAATAGGGTTATCACTATGGGAGAAATAAATGAAACAAAGTGTTCTTCGCTGGCCAGAAATGAATTAGAGAATCAAAAGGACCCAATCATCAATGGCATTGGAAATGCCAGCTCGGAGATAGCACGTCAGCAGGGAGCCAGTAGCAACGGTGTTACTAAACCTGCTGTTTCACCTTTGGCAACGACTTCGACATCTATGATCCCTGGTAATATTTCTGAAAATGGGGAGTCTAAGGTCAAGATCGAGAAAGATATATGA 2310 0.4368 MGEGEGGDYAPKNASSSEVVVPMVVSTAALEVPAKKLARQLDFTGAPEHQQSQSQPQQQPVAVLPLPLPPQVPHGRVGEVLIACFLRTLEILLIGGLFELSMHVDYHVSSSTGNKMVGGLNCFEYLTLVRNVRTVGFLANTIYEVVYSNFNSGWDTVIRQLEVLERIGAFEENMVESHIRWLRNERRPIGAVVRSINPMEDRPMIRDNGKQRIKRDLELDGLELRMGPGATPNLRLGDQLVMGSNLEKTSLHICKGKVAFHDPRPCLCIMGSLLALGKPESPKSRSRPNFEMKEATPKKQKQCNCKHSKCLKLYCECFASGIYCDGCNCVNCFNNVENEAARREAVEATLERNPNAFRPKIASSPHGTRDNREEAGEVLILGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDQNNMAYIQQAANAAITGAIGSSGFSSPPVSKKRKGQELFFWPTTKDPSISKLGQQVNHVRGPAPSSSLSPVSGARVGTASLGPSKFMYRSLLADIIQPQHLKELSSVLVLVSGQAAKTITDQKILMEKHTEDQTETSLASSSQEQLPSQKEGHVEKTVADDCSSANQTDKISPDDSSSDGADVPKGRPMSPGTLALMCDEQDTMFMTAATPVGPMAHACNTSSQFPYGQGMTEVYAEQERIVLTKFRDFLNRVITMGEINETKCSSLARNELENQKDPIINGIGNASSEIARQQGASSNGVTKPAVSPLATTSTSMIPGNISENGESKVKIEKDI 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02672 769 PANTHER TESMIN/TSO1-RELATED 278 693 IPR028307 -
Spst4g02672 769 MobiDBLite consensus disorder prediction 563 628 - -
Spst4g02672 769 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 300 335 IPR005172 -
Spst4g02672 769 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 386 420 IPR005172 -
Spst4g02672 769 MobiDBLite consensus disorder prediction 45 61 - -
Spst4g02672 769 MobiDBLite consensus disorder prediction 594 608 - -
Spst4g02672 769 MobiDBLite consensus disorder prediction 45 65 - -
Spst4g02672 769 SMART CXC_2 298 338 IPR033467 -
Spst4g02672 769 SMART CXC_2 383 424 IPR033467 -
Spst4g02672 769 MobiDBLite consensus disorder prediction 729 756 - -
Spst4g02672 769 ProSiteProfiles CRC domain profile. 299 423 IPR005172 -
Spst4g02672 769 MobiDBLite consensus disorder prediction 729 769 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02672 Spst-Chr4 66637902 66646902 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02672 279 716 CPP Transcription Factor Family AT4G29000 63.596 0.0 557
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Spst4g02672 TCR 4.3e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02672 - - gmx:100818116 909.827