Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02651 ATGTCTGTACCATTGGAGCAAGGCTATGTAGGCTTAGCACAGGTTCCTGCAATGGAAGGTTCAGACAAGTTTTCTCAGAGGACTAGTGGTGGCTTGAACCTCAAGGCTACTGAGCTGAGACTTGGTTTACCAGGTTCTGAGTCACCGGAGAGAAATGAGGGTGTGGAGAGCAAGAATGTGCACGCTTTAGGTATGGTCAAGAGTTTGGTGTCAGGGGCCAAGAGGGGTTTCTCAGACACCATTGATGGGCGTTCCGGGAAGTGGCTTCTCTCTGTGAATGGTGGATCTGAGGTGGGTTTGGGCAAAGATGGTGGCTTGTTCTCTCCAAGGGGTGTTGGTGCTAGTGCTTGCAAGGCTGAGTGTACCAACCAGCAAACATCTGTTGTGAAAGATAAAGTTCCTGTGTCTCCAAAGTCATTGAATGAGAAGAAACCTCAGATCTCTGCTCCTGTTGCAAAGGAGCAGGTTGTGGGATGGCCACCAATCCGATCTTTCAGGAAGAATTCAATGGCCTCACAGCCTCAAAAGAATGATGATGATGCAGAAGCCAAACCTGGATGCCTTTATGTGAAAGTTAGCATGGATGGTGCTCCATATTTGAGGAAAGTGGATCTCAAAAACTTTGGCACTTACATGGAACTGTCTTCAGCACTGGAAAAGATGTTTAGTTGTTTTACAATCAGTCAATGTGGTTCCCATGGAGTTTCTGGTCGAGATAAGTTGAGTGAAAGTAGATTGATGGACCTCCTTCATGGTTCAGAATATGTTCTCACCTATGAAGACAAGGATGGTGATTGGATGCTAGTTGGTGATGTTCCATGGGAGATGTTCACTGACTCATGCAAGAGATTGAGGATAATGAAGAGTTCTGAAGCAATTGGACTAGCACCAAGAGCCATGGAAAAATGCAAAACTCGGAACTAG 924 0.46 MSVPLEQGYVGLAQVPAMEGSDKFSQRTSGGLNLKATELRLGLPGSESPERNEGVESKNVHALGMVKSLVSGAKRGFSDTIDGRSGKWLLSVNGGSEVGLGKDGGLFSPRGVGASACKAECTNQQTSVVKDKVPVSPKSLNEKKPQISAPVAKEQVVGWPPIRSFRKNSMASQPQKNDDDAEAKPGCLYVKVSMDGAPYLRKVDLKNFGTYMELSSALEKMFSCFTISQCGSHGVSGRDKLSESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTDSCKRLRIMKSSEAIGLAPRAMEKCKTRN 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02651 307 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 32 294 IPR003311 GO:0005634|GO:0006355
Spst4g02651 307 SUPERFAMILY CAD & PB1 domains 185 288 - -
Spst4g02651 307 ProSiteProfiles PB1 domain profile. 187 289 IPR000270 GO:0005515
Spst4g02651 307 FunFam Auxin-responsive protein 182 299 - -
Spst4g02651 307 Gene3D - 181 300 - -
Spst4g02651 307 Pfam AUX/IAA family 37 298 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02651 Spst-Chr4 66509562 66512105 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02651 190 297 B3 DNA Binding Superfamily AT4G23980 30.556 7.43e-08 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Spst4g02651 AUX_IAA 2.5e-89 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g02651 4 66509562 66512105 Spst4g02651 4 66509562 66512105 ECH
Spst3g00860 3 12062531 12064842 Spst4g02651 4 66509562 66512105 PCT