Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02639 ATGAATCAGTTTGGTGTTATCCTTTTTGTTCTCTCGGTCTTGTTCCTCCATGTCAGAGCACAGACTGCAGAACCTTCAGGAGATGCTGTCTCCAATTTCCAGCCAAGCCTTGCAGTTGTCATAGGAATCCTTGGTGTCATGTTTCTACTGACATTCTTTCTTCTCATGTATGCGAAATTCTGTCAACACCACGGCTCTTCAGCCTCTCTTGGGGACCAAGAAAATCTACCAACTTTTGTGAGATCAAGGTCTAGATTCTCAGGAATTGACAAGACTGTCATAGAATCACTCCCCTTCTTTAGATTCTCTTCACTCAAAGGGTCAAAGGAAGGGCTGGAGTGTGCAGTGTGCCTATCAAAGTTTGAAGATGTTGAAGTTCTCAGACTTCTACCAAAGTGCAAGCATGCTTTTCATATTGATTGCATAGACAACTGGCTTGAAAGGCACTCTAGCTGTCCTATTTGCAGGCACAAGGTCAATCCAGAGGACCACACAACCTTCACATATACAAACAGTTTAAGGAGGCTAGCAAACCAATCAGGTCTAGGTGAAGAATCTAACATAGAGATCTTTGTCCAGAGAGAGGAAGAGCATCATGGTTCATCAAGATTCAGTATTGGAAGCAGCTTTCGGAAAACGGGAAATGATGTCAAAGAAGAAGAATTGCTCATCCAAAAGGGAGCAGAAGATAGTGATGGTAACCAGAAGGGGTATCATAAACACAACCACATGATTACTATATCTGATGTTGTGTTCAAACACAGGTGGAGCAACGTGAGTTCTTCAGACCTTATGTTTTTGAATTCGGAGATGTTGAATGCTACATCAAGCAACAGATTCAGCAACTTCGAATCAAATGCTGACCTGACAACCCCAAGAGAGCTGGTAGAAAATGAGCAAATTATGAACATCAAGGAGGAGATGGAAAGGAAGATTTCCTTTGAGAGCAAAGTTAGTGCATTAAGCAACATCAAATCAGTTTCAGATAACGATCGTCCTTTTACATCAGATTCTGCAGGAAAATCAAGTCATGCACCAAAGTCTGTGAACCCTGGTGAGAAAAGGTCAATGTCAGAAATCACTGCTGTCTCTAGATTTGGAGATTTAGGCATGAAAATGAGGGTATTCAAGGATTCTTCTTCTGTTCAGAACAACCTTAGAGAGGAAAGAATGAGGCAGATTTGGTTTCCAATAGCTAAAAGAACAGCTCAATGGTTTGTGAATAGAGAAAAAAGGTCTCAGCTATCTCTGAATATACAACAACCAAATGATGTATAA 1278 0.4108 MNQFGVILFVLSVLFLHVRAQTAEPSGDAVSNFQPSLAVVIGILGVMFLLTFFLLMYAKFCQHHGSSASLGDQENLPTFVRSRSRFSGIDKTVIESLPFFRFSSLKGSKEGLECAVCLSKFEDVEVLRLLPKCKHAFHIDCIDNWLERHSSCPICRHKVNPEDHTTFTYTNSLRRLANQSGLGEESNIEIFVQREEEHHGSSRFSIGSSFRKTGNDVKEEELLIQKGAEDSDGNQKGYHKHNHMITISDVVFKHRWSNVSSSDLMFLNSEMLNATSSNRFSNFESNADLTTPRELVENEQIMNIKEEMERKISFESKVSALSNIKSVSDNDRPFTSDSAGKSSHAPKSVNPGEKRSMSEITAVSRFGDLGMKMRVFKDSSSVQNNLREERMRQIWFPIAKRTAQWFVNREKRSQLSLNIQQPNDV 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02639 425 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 23 411 - -
Spst4g02639 425 MobiDBLite consensus disorder prediction 327 358 - -
Spst4g02639 425 SMART ring_2 114 155 IPR001841 -
Spst4g02639 425 CDD RING-H2_EL5-like 113 156 - -
Spst4g02639 425 FunFam RING-H2 finger protein ATL43 89 163 - -
Spst4g02639 425 SUPERFAMILY RING/U-box 93 162 - -
Spst4g02639 425 ProSiteProfiles Zinc finger RING-type profile. 114 156 IPR001841 -
Spst4g02639 425 MobiDBLite consensus disorder prediction 327 345 - -
Spst4g02639 425 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 88 165 IPR013083 -
Spst4g02639 425 Pfam Ring finger domain 113 156 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02639 Spst-Chr4 66342425 66343702 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02639 4 421 C3H Transcription Factor Family AT4G28890 48.539 9.69e-115 341
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02639 K10664 - gmx:100803207 704.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g02639 4 66342425 66343702 Spst4g02639 4 66342425 66343702 ECH