Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02637 ATGGAAGATGGCTTATCAACTCATCAAGAACCTGAAGGAGTTGCAGAGAATAATGTGAGAAAATCGAGTGCAGTCTCGGAGGAGCAACAATTGAAGTTCATTATCAATGGTGGAATTGTGAAAGAGTGTGAGTTGAGCGAGGCATTCTGGGCTGAATTGACCGTTGACAAGTGGAAGCTGGTCTTGCGTATGCCTACCTTTGAAGAAACCCTCTCAGGGTACCTCAGAGAAGGTGACGAAGATGTTACACAAGGAATCAAAGTCAACGTGTATGGTAAGGGTGGCCGGGAGTTTGAAATGACGCTCAAGAAATGGGTGAAATATCGAACCTCCTTCTTTGTGCTTAATCGAGGGTGGTTCACTTTCTGCGACCAACATGGCTTGAAAGTTAACGATCTCGTCGCCATTCGGATCTTCCGCCATGGAATAACCAACAAAATGGTTGGCGCGTGA 453 0.4592 MEDGLSTHQEPEGVAENNVRKSSAVSEEQQLKFIINGGIVKECELSEAFWAELTVDKWKLVLRMPTFEETLSGYLREGDEDVTQGIKVNVYGKGGREFEMTLKKWVKYRTSFFVLNRGWFTFCDQHGLKVNDLVAIRIFRHGITNKMVGA 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02637 150 CDD B3_DNA 85 141 IPR003340 GO:0003677
Spst4g02637 150 MobiDBLite consensus disorder prediction 1 21 - -
Spst4g02637 150 SUPERFAMILY DNA-binding pseudobarrel domain 83 143 IPR015300 -
Spst4g02637 150 Gene3D - 52 148 IPR015300 -
Spst4g02637 150 ProSiteProfiles B3 DNA-binding domain profile. 87 150 IPR003340 GO:0003677
Spst4g02637 150 Pfam B3 DNA binding domain 81 139 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02637 Spst-Chr4 66329982 66331636 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02637 51 150 B3 DNA Binding Superfamily AT4G03170 32.673 1.25e-08 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Spst4g02637 B3 9.8e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02637 - K21988 pvu:PHAVU_004G169500g 129.028