Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02636 ATGGCGGGGAATTCATCAAATTTCACAAAAGTCGTGGTAGAAGGAAGCAAATCCACAAAGGAAATCCGATTCAACGACGAGTTGCAACTCGACTTCATACTCAACTCAGGAATTGTGAAAGATTGCGAGTTGAGTTTGCCCTGTGGAGTGCAATTGACCAATGACAAGTGGAACCTGTTCTTGGCATTGGAAGGGTTTGAAGAAACCCTAATAGGGTTCTTGAAGGAAGAGGAAGATGTCAGAGAGGGGATTCAGGTGAACGTGTACGACAAAGGTGGCCATGAATTCCAAATGATGCTGAAGAAATGGGTGAAACACTCGAACCGCTTCTACGTTCTGAACAGAGGGTGGTTCAGTTTCTGCAACCAACATGGTTTGGGACAAGACGATCTCGTTGCTTTGCGTGCGTTTCGCCATGCCATAACTGACGTGTTATCTTTCGCTGTTACTTACAGAAGAATGAGGTAA 468 0.4509 MAGNSSNFTKVVVEGSKSTKEIRFNDELQLDFILNSGIVKDCELSLPCGVQLTNDKWNLFLALEGFEETLIGFLKEEEDVREGIQVNVYDKGGHEFQMMLKKWVKHSNRFYVLNRGWFSFCNQHGLGQDDLVALRAFRHAITDVLSFAVTYRRMR 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02636 155 ProSiteProfiles B3 DNA-binding domain profile. 85 155 IPR003340 GO:0003677
Spst4g02636 155 Pfam B3 DNA binding domain 80 136 IPR003340 GO:0003677
Spst4g02636 155 CDD B3_DNA 73 135 IPR003340 GO:0003677
Spst4g02636 155 Gene3D - 50 155 IPR015300 -
Spst4g02636 155 SUPERFAMILY DNA-binding pseudobarrel domain 77 148 IPR015300 -
Spst4g02636 155 PANTHER B3 DOMAIN PLANT PROTEIN-RELATED 72 149 IPR005508 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02636 Spst-Chr4 66327445 66327912 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02636 45 151 B3 DNA Binding Superfamily AT4G03170 34.513 2.66e-11 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Spst4g02636 B3 4.7e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02636 - K23901 pvu:PHAVU_004G169500g 172.555