Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02635 ATGGCAGATAGTTCATCAAGTTCGGCACAACCCATGATCGAAGGAAGCAAACGCACAAACGAAATCCTACTCAACGACGAGTGGCAGTTGGAGTTCATTCTCAATGCAGGAATTGTGAAAGATTGCGAGTTGAGTTTGCCATACAGGGCGCAATTGACCAATGACAAGTGGAACCTGTTCTTGTCATTGGAAGGGTTTGAAGAAACCCTAACAGGGTTCTTGAAGGAAGAAGAAGATGTCACAGAGGGGATTGAGGTGAACGTGTACGACAGAGGTGGCCATGAATTCCAAATGATGCTGAAGAAATGTGTGCAACACTCCAACCGCTTCTACGTTCTCAACAGAGGGTGGTTCAGTTTCCGCAACCAACATGGTTTGGGACAAGACGATCTCATTGCTCTGCGTGTATTTCGTCATGCCATAACTGACATCTTATCTTTTGTTCTTACTTATCAAAGAATCAGGTAA 468 0.4466 MADSSSSSAQPMIEGSKRTNEILLNDEWQLEFILNAGIVKDCELSLPYRAQLTNDKWNLFLSLEGFEETLTGFLKEEEDVTEGIEVNVYDRGGHEFQMMLKKCVQHSNRFYVLNRGWFSFRNQHGLGQDDLIALRVFRHAITDILSFVLTYQRIR 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02635 155 SUPERFAMILY DNA-binding pseudobarrel domain 77 151 IPR015300 -
Spst4g02635 155 Pfam B3 DNA binding domain 77 136 IPR003340 GO:0003677
Spst4g02635 155 Gene3D - 40 153 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02635 Spst-Chr4 66325719 66326186 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02635 44 151 B3 DNA Binding Superfamily AT4G03170 32.456 5.97e-10 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Spst4g02635 B3 1.5e-07 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02635 - K24964 pvu:PHAVU_004G169500g 167.548