Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02634 ATGGCAAGCTCGTCAAATGATGCAGGGAAGGGAAAAAGCATTGCTGAAGAGAGAGAATCTGAGAGAGAGTTTCTGTACAAGGATGAGTTGCAGCTGGAGTTCGTGTTCAACGTTGGCCATGTGAAAGACTTCGAGTTGAGCATGCCATATAGGGCACAGTTGACCAACGACAAGTGGAACCTGTTCCTGCGTGTGCCCTTCTTCGAAGAAATCCTGTTGCAGTTCCTGAAAGAGGATGAAGATGTCAAAGAGGGACTCCCAGTGACCGTGTACGACAAAGGGGGACATGAGTTCCCGATGATGCTCAAGAAATTTGACAAAGATTCCGTCACTTACTATGTGCTGAATCGAGGGTGGTTCAATTTCTGCGACCAAAAGCGCTTGCAGGAAAACGATGTTGTTGCATTGCGAACTTTTCGCCATGCAATAACTGACAAGTTATCCATCGTTGTTACTTACACAAAAATGAGACCACAACCACAACTTCCCACCTTGTATAATGCTATGGTAATGCCAGAAACTCAACACAACCATCAGTTCCGTTATCAAGTGTTGGGGAAGAAATTCATCGTGTCATAA 579 0.4508 MASSSNDAGKGKSIAEERESEREFLYKDELQLEFVFNVGHVKDFELSMPYRAQLTNDKWNLFLRVPFFEEILLQFLKEDEDVKEGLPVTVYDKGGHEFPMMLKKFDKDSVTYYVLNRGWFNFCDQKRLQENDVVALRTFRHAITDKLSIVVTYTKMRPQPQLPTLYNAMVMPETQHNHQFRYQVLGKKFIVS 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02634 192 CDD B3_DNA 74 141 IPR003340 GO:0003677
Spst4g02634 192 Gene3D - 49 160 IPR015300 -
Spst4g02634 192 ProSiteProfiles B3 DNA-binding domain profile. 88 157 IPR003340 GO:0003677
Spst4g02634 192 Pfam B3 DNA binding domain 73 138 IPR003340 GO:0003677
Spst4g02634 192 SUPERFAMILY DNA-binding pseudobarrel domain 61 142 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02634 Spst-Chr4 66322619 66323759 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02634 23 155 B3 DNA Binding Superfamily AT4G03170 30.216 6.15e-07 46.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Spst4g02634 B3 1.3e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02634 - K13761 pvu:PHAVU_004G169500g 271.166