Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02622 ATGAATGGTCAGGACAATGTGCTTGTATTGGAGCGTAGCCCATTCCAGCTGATGCGTTCCACAATGTGGGGGTTGGTGTTGCTGAAGCAACAACAGTTGAGATATGGCTGCATCAAGCTGCAGTGCTTGTGGTGTTGTGGATCATTGGCATTGTTTTTGGCACTTCACAGCTCACAATCATATCACAGAGAGACAGTGGTGAGTGGAATGGAGAGCACACTCAAGGCCCTGAGAGATGGTGAGTCAGTGCTTGATCTGAGTCCAAGATCAACCGTGAGTGGTGGTGTAGAAGATGTCTACGGTGAGGATCATGCCACTGAGGACCAACTAGTCACCCCATGGAATTTCTCAGTTGCCAGTGGATACTCTTTGCTTAGAGATCCACAGTACAACAAGGGGCTTGCTTTCACTGAGAAAGAGAGAGAGGCACACTATTTGTGTGGACTATTACCTCCTACAATTACCTCCCAGCAACTTCAGGAGAAGCAGTTGATAAACAATATTCGACAGTATCAGGTGCCCTTACAAAAGTACATAGCTATGATGGAACTTCAGGAGACGAATGAAAGGCTGTTTTACAAACTTCTAGTTGACAATGTTGAGGAACTGCTCCCAATTGTGTATACTCCTGTTGTTGGTGAGGCTTGCCAGAAATATGGGAGCATTTTCAAGCGTCCTCAGGGTCTTTTCATAAGTTTGAAAGAGAAGGGGAAGATCCTTGAGGTGTTGAAAAACTGGCCTGAGAGGAGTATTCAAGTTATTGTCGTAACAGATGGTGAACGAATTTTGGGACTTGGGGATCTGGGATGTCAGGGAATGGGAATTCCTGTTGGTAAATTGGCCTTGTACACAGCATTAGGAGGAGTTCGTCCATCAGCATGTTTGCCTATTACGATTGATGTGGGAACAAACAATGAGAAATTACTGAATGATGAGTTTTACATTGGACTTAGACAAAAGAGGGCAACTGGGAAGGAATATTCCGAACTCCTGCATGAGTTCATGACTGCTGTCAAGCAAAACTACGGAGAAAAAGTTCTTATACAGTTCGAAGATTTTGCAAACCACAATGCTTTTGAGTTGCTCGCAAAATATGGTACAACTCATCTTGTTTTCAATGATGATATTCAGGGGACTGCATCTGTCGTTCTTGCTGGAGTTGTGGCAGCCTTGAAGCTCATTGGTGGTACTCTGGCTGACCACACATTCTTGTTCCTTGGTGCTGGAGAGGCAGGGACAGGAATAGCAGAACTTATAGCTCTTGAGATGTCAAAGCAGACAAAGACACCTATAGAGGAGACTCGCAAGAAGATATGGCTTGTCGATTCGAAGGGTTTGATTGTTGGTTCAAGAAAGGCTTCACTTCAACATTTCAAGAAGCCTTGGGCTCATGAACATGAGCCTGTTGATAGTCTCTTAGAAGCCGTAAAGGTAATCAAGCCTACAGTTTTAATTGGATCATCAGGAGTGGGAAAAACATTTACAAAGGAAGTAATTGAAGCTGTGACTTCTATCAATAAAAAACCTCTTGTTATGGCTCTCTCCAATCCAACATCACAGTCTGAGTGTACAGCTGAAGAGGCTTACCAATGGAGTGAGGGCCGTGCAATTTTTGCTAGTGGGAGTCCATTTGATCCTATAGAATACAAGGGCAAAGTGTACTATTCAGGCCAGGCCAACAATGCTTACATTTTCCCTGGCTTTGGTTTGGGATTGGTAATCTCTGGAGCAATCCGAGTACACGATGATATGCTTCTGGCAGCTTCGGAAGCCTTGGCTAAACTAGTGACTGAGGAGAACTACGAAAAGGGCTTGATTTATCCACCATTCTCTGACATCAGAACAATTTCAGCTAACATAGCAGCAAGTGTTGCTGCCAAGGCATATGAGCTAGGTTTGGCTACACGTCTCCCTCGTCCTCAGAATCTTGTGAAGTATGCAGAGAGTTGCATGTATACCCCTGTGTACCGAAAGTATAGGTGA 1983 0.4438 MNGQDNVLVLERSPFQLMRSTMWGLVLLKQQQLRYGCIKLQCLWCCGSLALFLALHSSQSYHRETVVSGMESTLKALRDGESVLDLSPRSTVSGGVEDVYGEDHATEDQLVTPWNFSVASGYSLLRDPQYNKGLAFTEKEREAHYLCGLLPPTITSQQLQEKQLINNIRQYQVPLQKYIAMMELQETNERLFYKLLVDNVEELLPIVYTPVVGEACQKYGSIFKRPQGLFISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGVRPSACLPITIDVGTNNEKLLNDEFYIGLRQKRATGKEYSELLHEFMTAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLADHTFLFLGAGEAGTGIAELIALEMSKQTKTPIEETRKKIWLVDSKGLIVGSRKASLQHFKKPWAHEHEPVDSLLEAVKVIKPTVLIGSSGVGKTFTKEVIEAVTSINKKPLVMALSNPTSQSECTAEEAYQWSEGRAIFASGSPFDPIEYKGKVYYSGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKLVTEENYEKGLIYPPFSDIRTISANIAASVAAKAYELGLATRLPRPQNLVKYAESCMYTPVYRKYR 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02622 660 Gene3D - 119 373 IPR037062 GO:0004471
Spst4g02622 660 PRINTS Malic enzyme signature 251 280 IPR001891 GO:0004470|GO:0004471
Spst4g02622 660 PRINTS Malic enzyme signature 347 365 IPR001891 GO:0004470|GO:0004471
Spst4g02622 660 PRINTS Malic enzyme signature 506 522 IPR001891 GO:0004470|GO:0004471
Spst4g02622 660 PRINTS Malic enzyme signature 372 388 IPR001891 GO:0004470|GO:0004471
Spst4g02622 660 PRINTS Malic enzyme signature 403 419 IPR001891 GO:0004470|GO:0004471
Spst4g02622 660 PRINTS Malic enzyme signature 287 309 IPR001891 GO:0004470|GO:0004471
Spst4g02622 660 PRINTS Malic enzyme signature 191 215 IPR001891 GO:0004470|GO:0004471
Spst4g02622 660 SMART Malic_M_2 376 629 IPR012302 GO:0051287
Spst4g02622 660 FunFam Malic enzyme 119 373 - -
Spst4g02622 660 Pfam Malic enzyme, N-terminal domain 185 365 IPR012301 GO:0004471
Spst4g02622 660 Gene3D - 374 660 - -
Spst4g02622 660 FunFam Malic enzyme 374 660 - -
Spst4g02622 660 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 98 375 IPR046346 -
Spst4g02622 660 ProSitePatterns Malic enzymes signature. 372 388 IPR015884 GO:0004471
Spst4g02622 660 CDD NAD_bind_1_malic_enz 376 654 - -
Spst4g02622 660 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 376 659 IPR036291 -
Spst4g02622 660 PANTHER MALIC ENZYME-RELATED 87 659 - -
Spst4g02622 660 PIRSF ME 89 660 IPR001891 GO:0004470|GO:0004471
Spst4g02622 660 SMART malic_2 185 366 IPR012301 GO:0004471
Spst4g02622 660 Pfam Malic enzyme, NAD binding domain 376 628 IPR012302 GO:0051287
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02622 Spst-Chr4 66177624 66185792 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02622 K00029 - gmx:100784112 1128.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g00882 3 12255756 12261269 Spst4g02622 4 66177624 66185792 PCT