Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02586 ATGGGCAGAAAATGCTCACATTGTGGAAACATAGGTCATAATTCCAGGACCTGCTCATCCTTCAGAGCAACTTTTGTAGGAGTTCGTCTATTTGGGGTTCAACTAGACATATCAAGCTCTTCTGCTCTCACCATGAAGAAAAGCTTCAGCATGGATTCCTTGCCCTTATTATCTTCTCCATCTTCCTCCTTTTCTTCCTCAAGAATCTCCGTTGACGACCATTCTGATAAAACCTCTATTGGATATCGATCAGATTCAGATGGCTTCATTGTTCGAGCACAAGATAGGAAGAAAGGAGTGCCATGGACAGAAGAAGAGCACCGAACATTTCTTGTTGGACTTGAGAAGCTGGGGAAAGGTGATTGGAGGGGTATCTCCAGAAACTATGTGACTACAAGAACCCCAACACAAGTTGCTAGCCATGCCCAGAAGTACTTTATTCGGCTTGCAACCTTGAATAAGAAAAAGAGACGTTCAAGTCTTTTTGACTTGGTTGGTAGCGGCGGCTCTAACTGCAAGCAAGGTGTTTTGATTTGTCCTATTAAATCCCAATGTGAAATTGAGAACGATGTCACCTTGTCACTTCTTCAATTACAAGAAACCAAGTCAGATGAGCAGAAAGATAGTGATACTTGTGGTCAAGCTCAACCTGGTGCAGATCATGAAGCTGCTATGGGGCTTCATCCTCAGATGAAATCTTCAAATAGTAATATTGCAGCAGTTCCTGATCTGGAACTCACTCTTTCAGTCTCCAAGGGCAAGGCTAAGACCATGGAACAAACTAAATCAACCCCGGGTTCTTTCTTTCTTGGTCCAATTAGCGTGACTTAA 831 0.4296 MGRKCSHCGNIGHNSRTCSSFRATFVGVRLFGVQLDISSSSALTMKKSFSMDSLPLLSSPSSSFSSSRISVDDHSDKTSIGYRSDSDGFIVRAQDRKKGVPWTEEEHRTFLVGLEKLGKGDWRGISRNYVTTRTPTQVASHAQKYFIRLATLNKKKRRSSLFDLVGSGGSNCKQGVLICPIKSQCEIENDVTLSLLQLQETKSDEQKDSDTCGQAQPGADHEAAMGLHPQMKSSNSNIAAVPDLELTLSVSKGKAKTMEQTKSTPGSFFLGPISVT 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02586 276 Gene3D - 100 152 - -
Spst4g02586 276 FunFam transcription factor MYB1R1 100 151 - -
Spst4g02586 276 NCBIfam myb-like DNA-binding domain, SHAQKYF class 97 148 IPR006447 GO:0003677
Spst4g02586 276 SUPERFAMILY Homeodomain-like 96 149 IPR009057 -
Spst4g02586 276 CDD SANT 101 146 IPR001005 -
Spst4g02586 276 ProSiteProfiles Myb-like domain profile. 94 146 IPR001005 -
Spst4g02586 276 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 94 150 IPR017930 -
Spst4g02586 276 PANTHER TRANSCRIPTION FACTOR KUA1 3 234 - -
Spst4g02586 276 Pfam Myb-like DNA-binding domain 101 146 IPR001005 -
Spst4g02586 276 ProSiteProfiles Zinc finger CCHC-type profile. 3 18 IPR001878 GO:0003676|GO:0008270
Spst4g02586 276 ProSiteProfiles SANT domain profile. 102 150 IPR017884 -
Spst4g02586 276 SMART sant 98 148 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02586 Spst-Chr4 65844931 65846270 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Spst4g02586 Myb_DNA-binding 1.9e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02586 - - pvu:PHAVU_004G171200g 385.956