Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02566 ATGGGAAGGGCTCCATGCTGTGACAAATCTCTCGTCAAAAGAGGGCCATGGTCTCCTGATGAAGATGCCACCCTCAGAAACTACCTTCAGAAACATGGCACAGGTGGTAATTGGATAGCTCTCCCCAAAAAAGCAGGCCACATATTAAGCTTGGAGGTTTCACTGAAGAGGAAGACAGAGTTATCTGCACCCTTTATGGCACCATTGGAAGTAGGCAAGTGGTCCCTTATAGCAGCTCAACTGCCCGGGAGAACAGATAATGATGTGAAAAATCACTGGAACACCAAACTAAAGAAAAAGTTCTTGGCAGGAAACACTAGTAGTACTGTTGCCACAAGCTGCAACAATGGCACTGTCAGCAGAAATAGTGACAATGACCAATTCTCATCTTTTACTCTTCAACCTCAAGTTGAGGCCTTTGTCTTGAATCAGAAACTGAACTCAGCTTGGTTTGACTCCTACAATATTTTGGATTTGGGACAAGCACCAATTCCAGTTCCTCTTCCAATGCCTCAGGAATCAGAAGGATTTAATACTGGGGAGAGCAGTTTTAGTGCACCACCCTCTAAGGAAGTTTCAGTGCTAATATCCAATGCAGCTTCCTTAGCACAGCAGAACAAACATACACAATGGTTTGGCTACGACTATGCAGGTGAAGATGATCCAAATTTTCTTGAATTTGTGCTTGACGATCTGCTGATCAATCATGGGTTTGCAACTCCTGATGACAAAAGCAGCCGGGCTGCTCCATCATGTCTGGCTAACCAAGACTCATTCTACTCATCAAAAACTTGA 795 0.4415 MGRAPCCDKSLVKRGPWSPDEDATLRNYLQKHGTGGNWIALPKKAGHILSLEVSLKRKTELSAPFMAPLEVGKWSLIAAQLPGRTDNDVKNHWNTKLKKKFLAGNTSSTVATSCNNGTVSRNSDNDQFSSFTLQPQVEAFVLNQKLNSAWFDSYNILDLGQAPIPVPLPMPQESEGFNTGESSFSAPPSKEVSVLISNAASLAQQNKHTQWFGYDYAGEDDPNFLEFVLDDLLINHGFATPDDKSSRAAPSCLANQDSFYSSKT 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02566 264 SUPERFAMILY Homeodomain-like 14 98 IPR009057 -
Spst4g02566 264 SMART sant 13 99 IPR001005 -
Spst4g02566 264 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 72 101 IPR017930 -
Spst4g02566 264 Pfam Myb-like DNA-binding domain 72 95 IPR001005 -
Spst4g02566 264 ProSiteProfiles Myb-like domain profile. 9 97 IPR001005 -
Spst4g02566 264 PANTHER OS09G0431300 PROTEIN 1 46 - -
Spst4g02566 264 CDD SANT 16 97 IPR001005 -
Spst4g02566 264 Gene3D - 9 60 - -
Spst4g02566 264 Gene3D - 65 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02566 Spst-Chr4 65750640 65751878 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02566 1 103 MYB Transcription Factor Family AT5G57620 51.261 1.57e-34 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst4g02566 Myb_DNA-binding 2e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02566 K09422 - gmx:778160 285.419