Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02564 ATGATGCTCGGAGAGCACCATCGAGCCAATCCGACGGTCCACGTCCCACCCTGGCCAACCCACGATGATCCAACGCCTGAGATGTACTCCGCGTTTTTAGCAAACGACGTCAATGCTGCTGAGTACTCTCCCTACTATCTTCAAGAAGCGTTAACGGCGCTGCAGCGTTACCTTCCCTCCAACGAAACGGATGCTGACTCCGACTCCGAGGCTCAACCCGACGCGCCGGTTGACGCCTACTCCTGCGACCATTTCCGTATGTACGAGTTCAAGGTCCGTCGATGTGCGCGTGGCAGGTCGCACGACTGGACTGAGTGTCCCTACGCGCATCCCGGCGAGAAGGCGCGCCGCCGCGACCCGCGCAAATTTCACTACTCCGGCGCTGCATGCCCCGAGTTCCGCAAGGGGAGCTGCAAGAAAGGCGACACGTGCGAGTTCGCGCACGGTGTCTTCGAGTGCTGGCTTCACCCAGCGCGCTACCGCACGCAGCCGTGCAAGGACGGCACCAGTTGCCGCCGGCGCGTGTGCTTCTTCGCGCACACACCGGAGCAGCTGCGCCTCGTGCCGATGCATAGTCCTCGCAGCTCGGGGGAGTCCTACGACGGTTCTCCTATGAGACAGGTTCTACAGTCGACGTCGTTCATGTCGTCTCCGGCGGCTTCTCTTTCTCCGCCGGAGTCTCCGCCCGTGTCACCGTCGATGAACGAGATGGTGGCTTCTCTGCGTAATTTGCAGCTTGGGAAGATGAAATCGATGCCTCATAACCGAAACGTTTCGGTCGGGTCGCCGTGTTACGGGTCACCCAGAGGATCCGTGCTCCGACCCGGGTTCTGTAGTCTTCCGACAACCCCAACTCAGCAACCTGTTCGGTCTGGGGCGAACTATTTGGATCTTTGGGAGCAGAACTGTGAGGAGGAACCGGTTATGGAGAGGGTGGAGTCTGGGAGAGGCATAAGGGCTAAGATGTTTGAGAAGCTAAGCAAAGAAAACTCTCTGGAGGGTTCGGGTTCGGGTCAGGGAAGTGGGGCTCCGGATGTTGGGTGGGTTTCAGAGCTGGTGAAGTGA 1065 0.5944 MMLGEHHRANPTVHVPPWPTHDDPTPEMYSAFLANDVNAAEYSPYYLQEALTALQRYLPSNETDADSDSEAQPDAPVDAYSCDHFRMYEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKFHYSGAACPEFRKGSCKKGDTCEFAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRLVPMHSPRSSGESYDGSPMRQVLQSTSFMSSPAASLSPPESPPVSPSMNEMVASLRNLQLGKMKSMPHNRNVSVGSPCYGSPRGSVLRPGFCSLPTTPTQQPVRSGANYLDLWEQNCEEEPVMERVESGRGIRAKMFEKLSKENSLEGSGSGQGSGAPDVGWVSELVK 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02564 354 MobiDBLite consensus disorder prediction 212 233 - -
Spst4g02564 354 MobiDBLite consensus disorder prediction 1 20 - -
Spst4g02564 354 ProSiteProfiles Zinc finger C3H1-type profile. 125 151 IPR000571 GO:0046872
Spst4g02564 354 FunFam Zinc finger CCCH domain-containing protein 66 82 150 - -
Spst4g02564 354 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 128 149 IPR000571 GO:0046872
Spst4g02564 354 PANTHER UNKEMPT FAMILY MEMBER 48 354 IPR045234 -
Spst4g02564 354 SMART c3hfinal6 159 182 IPR000571 GO:0046872
Spst4g02564 354 SMART c3hfinal6 124 150 IPR000571 GO:0046872
Spst4g02564 354 Gene3D - 124 187 - -
Spst4g02564 354 MobiDBLite consensus disorder prediction 328 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02564 Spst-Chr4 65745169 65746233 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02564 73 258 C2H2 Transcription Factor Family AT5G12850 50.242 5.49e-59 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Spst4g02564 zf-CCCH 2.4e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02564 - - gmx:100778184 647.121