Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02558 ATGGAGAATAGATGCATTCTAGCTTTTTTCATCCTCATTCTACATGCAAGTACAACAGAAGCTGTCTTCAGTGGTGGTGGTGGTGTAGGTATAGGTGTAGGTGTTGGTGTTGGTGTTGGCAATGGAAATGGTGGTGGTGGCAATGGTGGAACGGTTTGGGTTGGAGGAGGAATTAACAGCCCTGAGCCCCCTGCATCTTCGGTGCCAAAGCTTGAAGCGGCTTACACAGCTTTGCAGGCTTGGAAATCTGCAATCACTGAGGACCCTCTTAACATTTTAGGAAGTTGGATTGGGCCGAATGTGTGTTCTTACAAAGGAGTCTTCTGTGCAAATCCTCAAGATGAAATGGTTGCATCAACATTCCCAGTTGTCGCAGGCATAGATCTCAACCATGCAAATCTGAAAGGAATTCTTGTCAAAGAGCTCTCTCTACTCAGTGATTTGTCTCTTCTCCACCTCAACAGTAACAGATTCACTGGCACTGTTCCTGATACATTCAGAGACCTGGTGTTTCTGGAAGAGTTAGACCTCAGCAACAACCAACTTTCAGGTCCTTTCCCTGCTGCTACGTTGTACATGCCAGGCCTGATCTACTTGGACCTCAGATTCAACTACTTCTCTGGGGGCCTCCCCGAGGAACTTTTCAGCAAGAATCTGGATGCAATATTCCTCAATAACAACCAATTTGAAGGTGAAATTCCCCAAAACTTGGGTAGTTCCCCTGCCTCGGTGATAAACCTGGCCAACAACAAGTTGAGTGGAAACATCCCAGCAAGTCTGGGCTTCATGGGTTCTAAAATAAAGGAGATTCTGTTCCTCAATAACCAGTTAACTGGTTGCATCCCTGAGGGAGTGGGGCTATTCACAGAGATGCAAGTTCTAGATGTGAGCTTCAACTCACTTATGGGTCATTTGCCTGACACGCTATCATGCCTGCAAGACATAGAAGTTCTCAATTTGGCCCATAACAAGCTCTCTGGGGAGTTATCAGATATAGTCTGTTCTTTGAGAAATCTTGCAAATCTAACTGTTGCTTATAATTTCTTTTCTGGGTTCAGCCAGCAATGCTCAAGGCTTTTCTTTAGGAATGTGGGTTTTGATTTCTCCCTAAACTGCATTCCTGGGAGGGACATGCAGAGACCTCAACCTGAGTGCTCTGTGATCCCAGGTGGTAGCCTTAGTTGTCTCAGAATCCCCACTCCAAGGCCTCTTGTTTGTGGGTCAATGGTTGTAAGTAAGTCTAAGCACATTGATCCCATTTCACCATCTCCTTGA 1275 0.4565 MENRCILAFFILILHASTTEAVFSGGGGVGIGVGVGVGVGNGNGGGGNGGTVWVGGGINSPEPPASSVPKLEAAYTALQAWKSAITEDPLNILGSWIGPNVCSYKGVFCANPQDEMVASTFPVVAGIDLNHANLKGILVKELSLLSDLSLLHLNSNRFTGTVPDTFRDLVFLEELDLSNNQLSGPFPAATLYMPGLIYLDLRFNYFSGGLPEELFSKNLDAIFLNNNQFEGEIPQNLGSSPASVINLANNKLSGNIPASLGFMGSKIKEILFLNNQLTGCIPEGVGLFTEMQVLDVSFNSLMGHLPDTLSCLQDIEVLNLAHNKLSGELSDIVCSLRNLANLTVAYNFFSGFSQQCSRLFFRNVGFDFSLNCIPGRDMQRPQPECSVIPGGSLSCLRIPTPRPLVCGSMVVSKSKHIDPISPSP 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02558 424 PRINTS Leucine-rich repeat signature 312 325 - -
Spst4g02558 424 PRINTS Leucine-rich repeat signature 172 185 - -
Spst4g02558 424 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 62 400 - -
Spst4g02558 424 FunFam Leucine-rich repeat extensin-like protein 1 75 239 - -
Spst4g02558 424 SUPERFAMILY L domain-like 75 358 - -
Spst4g02558 424 Pfam Leucine rich repeat N-terminal domain 74 109 IPR013210 -
Spst4g02558 424 Gene3D Ribonuclease Inhibitor 72 238 IPR032675 -
Spst4g02558 424 Pfam Leucine rich repeat 148 205 IPR001611 GO:0005515
Spst4g02558 424 Gene3D Ribonuclease Inhibitor 239 362 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02558 Spst-Chr4 65683640 65684914 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02558 69 397 Leucine-rich Repeat extension Gene Families AT3G24480 51.045 8.39e-108 325
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02558 - - gsj:114407518 734.947