Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02548 ATGGGGAACAAAATCGCGCGCACGACGCAGGTTTCGGCGTCGGAGTACTACCTGCATGACCTGCCGTCGACGTACAATCTGGTTCTGAAGGAGGTTTTAGGTCGTGGCCGTTTCTTCAAGTCCATTCAGTGCAAACACGACGAGGGTTTGGTTCTCGTCAAGGTCTATTTCAAGCGCGGCGATTTCCTTGATCTCTCCGACTACGAACGCCGTCTCTCTCAGATCAAACAAATTTTCTCCTCCATCGATCAACCTCACGTTTGGCCGTTTCAGTTTTGGCAAGAAACGGATAAAGCAGCTTACCTTTTGAGGCAGTATTTCTTCCATAATTTGCATGATAGGTTAAGCACTCGACCATTTCTTAGTCTTGTTGAGAAGAAATGGTTGGCTTTTCAGTTGCTTGTAGCTGTAAACCAGTGCCACGAGAATGGAGTGTGTCATGGTGATATCAAGTGTGAGAATGTGCTGATTACCTCCTCCAATTGGCTTTACCTTGCTGACTTTGCATCTTTCAAACCCACTTACATTCCATATGATGACCCATCCGATTTCTCTTTTTTCTTTGACACTGGCGGACGAAGACTCTGTTATCTTGCACCTGAGAGATTTTATGAACATGGAGGGGAGATGCAAGTGACTCAAGATACCCCCTTAAAACCCTATATGGATATATTCGCCGTCGGGTGTGTAATTGCCGAACTTTTCCTTGAGGGGCAGCCGCTATTTGAACTTTCTCAACTTCTTGCTTATCGCAGAGGGCAATATGATCCAAGTCAACTCCTTGAAAAGATACCAGATATTGGGATCCGTAAAATGATAATGCACATGATTCAGTTAGAACCAGAGTCCCGATTTTCTGCTGAAAGATATCTGAAGGAATATGCTGCAGTTGTTTTTCCTATCTATTTTTCACCATTTCTACATGATTTTTACCGTTGCTGGAGTCCTCTTCATTCTGACATGAGGGTTTTACTTTGCCAAAGTGCTTTTCCGGAGATACTTAAACAAATGATGAACAATAAGTCATCTGATGATGCAGGTACTAATTCCGGGGAACTTTTGGAAGAGACGGTTGCTGAAGAAAGTGTGAGTTTCGCAAAGATGAAGAGAGAAGACATAGGAAAAGGCTTAGTCCATGATCACTATGAACTTCTTGGTGATATTAATAGCCTACTGAGGGATGCTAAAAAAATTAATAATCCACCACATGTAGCAGGAAATGCACATAATTCAACCTTCCCTGAAAATCCTGCAAATCTGCAAACTGGTAAACTGCTTCAAACTATCTCTAATGCATTTCGAGGAAATGACCATCCCTTTCTGAAAAGTATTACTATGAACGATTTAAATTCATTGATGTCAGAGTATGATAGTCAATCAGATACATTTGGAATGCCTTTTCTACCCTTACCAAAGGATAGTATGAGATGTGAAGGCATGGTTTTGATTACTTCTTTGCTGTGCTCTTGCATACGCAATGTCAAGTTGCCTCACCTGAGAAGAGCAGCTGTACTCTTGTTGAAGGCTTCTGCCCTATATATCGATGATGAAGATCGCTTGCAGCGTGTTATCCCATATGTGATTGCCATGCTTTTAGATTCAGCAGCAATTGTACGGTGTGCTGCTTTGGAGACTTTGTGTGACATTCTTCCTTTAGTGAGGGATTTTCCTCCCAGTGATGCAAAGATATTTCCTGAGTATATTCTTCCAATGCTTTCTATGCTTCCTGATGATCCTGAGGAAAGTGTGAGGATATGCTATGCCAGCAATATAGCTAAACTGGCACTGACTGCGTATGGATTCCTGATACGCTCAATAAGTTTAAGTGAGGCGGGTGTCCTTGATGAATTGAGTTTGCCACAGAAGCCATTGACATCATCCACTCAGACCTCTGGAAGAATGAAGAGGATAAATGGTGATGTTCAACTTCTGCAGCTGAGGAAATCCATTGCAGAGGTTGTCCAAGAACTTGTCATGGGTCCAAAGCAAACCCCAAATATAAGGAGAGCACTTCTCCAGGATATTGGTAAACTGTGCTACTTCTTTGGTGTGAGACAGAGTAATGACTCTCTCTTACCCATTCTTCCTGCCTTCTTGAATGATCGGGATGAGCAATTAAGGACAGTATTCTATGAAAAGATTGTTTATGTCTGCTTTTTTGTGGGGCAAAGGAGTGTAGAAGAATATTTATTACCTTATATAGAGCAAGCTTTAAGTGACGTGACAGAATCTGTCATTGTTAAAGCCGTAGAATGTATGACTATTCTATGCAAAAGTGGGTTTTTCCGAAAGAGGACATTGCTTCAAATGATAGAGCGTGCCTTTCCATTATTGTGTTATCCTAGTGAATGGGTACGGAGATCAGTTGTATCTTTTATTGCTGCTAGCAGCGAGTGCCTGGGTGCAGTAGATTCTTATGTTTTCCTTGCTCCTGTTATACGGCCTTTCCTCCGCAGGCAACCTGTGTCTCTTGCTTCTGAAAAGGCTCTGCTTTCGTGTATTAAACCTCCTGTCTCAAGACAGGTATTCTATGAAGTCTTGGAGAACTCCAGGAGTTCGGACATGTTAGAAAGACAGAGAAAAATATGGTATAGTTCTTCACAATCTAAACTATGGGAAATGGATTTACTGAAAAAAGGAATTGATGAGTTGGACTCATTAAAGAACTGGACTGACAAGCAACAAGGTCCTGGGGTTCAACAAACTATTGGCTCTGCCTTCCAACAGCCAGGGATAACTGATTGTGACAAAGCTGAGGCAAAATTGAGAGATATGGGAGCGTTTATGCATAGTGATAGCAATGGTGTGGGACATCGGGATACCCAATGCTTGGAGAAGTTACAGTTTTCTGGATTTATGTCACCAAATTTTAGTGGTGTGAACAGTTTGACATATGAAAAGCCATCAGAAGGCATACCTTTGTACTCCTTCTGTGTGGACAGGCGAGGAATGGGAATCCCACCTGCAGCATCTGATCCTCCACTGCCAATCAATTCTCTGGGTGTTAGTTCATCTGCAATGCCTTGGGTTAATCCACTTAGCAAGTCCTTTAATTTGGCTAGTTCAGTTCCGGCACCGAAGCTTTTTTCAGGTTCCTTTAGTATCAGCAATGGTTCTAAACAGTTCCATCGAGTGGTACATGAACCAGATGCCAGGGAAAATGAGACAGCCTATATTAATAGCACATTTCAAGATCTGGGATCATCTGCTAATATTAAAGGTACTTCAATTGCACTGGAAGATGCAACTGCCCAAACTGATCTATCAGGATTTCCATCTTTCGCTCGAGCTTCCATTCCTGATTCTGGTTGGAGACCCCGTGGGGTGTTGGTTGCACACCTCCAGGAGCACCGATCAGCTGTCAATGACATAGCTATATCTACTGACCATAGTTTCTTTATGAGCGCATCTGATGATTCTACAGTCAAGATTTGGGACTCTAGAAAGCTTGAAAAGGACATTTCATTCAGGTCTAAGCTAACTTATCACCTGGAGGGAAGCCGAGTGTTGTGTGCAACAATGCTTCCAGGTTCTGCACAAGTTATAATTGGAGCATCTGACGGGTTTATTCATATGTTTTCTGTTGATCATATCTCTAGAGGTCTTGGAAATGTTGTCGAGAAATATTCTGGCATTGCTGATATCACAAAGAAAGATATCAAGGAAGGTGCCATACTCAACCTTTTGAATTGCCCTGTGGATAATTATACCATTATGTATAGTACACAGAACTGTGGCATTCATCTATGGGATACTAGGTCAATGTCCAATACCTGGACTCTTAAAGCTACTCCTGAGGAGGGCTATGCTTCTTCTCTAGCATCTGGGCCTTGTGGTAATTGGTTTGTATCAGGGTCATCGCGGGGGGTTATTACACTTTGGGACCTGAGATTTCTTATACCTGTTAATTCTTGGAAGTATTCTCATGCTTGCCCTATAGAAAAGATGTGTCTCTTTCTTCCTCCTTCAAATGCTTCTCTGTCTTCAGCTGCTAGGCCCCTTGTTTATGTGGCTGCTGGTTGCAATGAAGTTTCCCTTTGGAATGCAGAGAATGGTAGCTGCCACCAGGTCCTAAGGATGGCCAATTATGATAGTGATGCTGAAATGTCTGATCTGCCTTGGGCCTTGGCCAGACCTTCAAGTAAGCCAACTTCTCAATCAGATCTAAGACGATATGTTAATCGTAAGTATGGAGTTGATGAGCTAAATGAACCTCCTCCTCGTCTTCCTGGTATTCGATCATTACTTCCCTTGCCTGGGGGTGATTTGTTGACTGGTGGCACTGATCTAAAGATACGACGGTGGGATCATTACAGTCCTGACAGAAGTTACTGTATTTGTGGACCAAACTTAAAAGGAATAGGAAATGATGATTTTTATGAATCAAAATCTAGTTTTGGGGTGCAAGTTGTACAGGAGACAAAAAGACGTCCTCTTACAATCAAGCTGACAGCAAAGGCGATTCTTGCAGCTGCTGCCACTGATTCTGCTGGTTGCCATCGTGACTCTATTGTTTCTTTGGCTTCTATTAAGTTACACCAGAGACTCTTACTTTCAAGTGGTAGAGACGGGGCCATCAAGGTTTGGAAGTAA 4593 0.4252 MGNKIARTTQVSASEYYLHDLPSTYNLVLKEVLGRGRFFKSIQCKHDEGLVLVKVYFKRGDFLDLSDYERRLSQIKQIFSSIDQPHVWPFQFWQETDKAAYLLRQYFFHNLHDRLSTRPFLSLVEKKWLAFQLLVAVNQCHENGVCHGDIKCENVLITSSNWLYLADFASFKPTYIPYDDPSDFSFFFDTGGRRLCYLAPERFYEHGGEMQVTQDTPLKPYMDIFAVGCVIAELFLEGQPLFELSQLLAYRRGQYDPSQLLEKIPDIGIRKMIMHMIQLEPESRFSAERYLKEYAAVVFPIYFSPFLHDFYRCWSPLHSDMRVLLCQSAFPEILKQMMNNKSSDDAGTNSGELLEETVAEESVSFAKMKREDIGKGLVHDHYELLGDINSLLRDAKKINNPPHVAGNAHNSTFPENPANLQTGKLLQTISNAFRGNDHPFLKSITMNDLNSLMSEYDSQSDTFGMPFLPLPKDSMRCEGMVLITSLLCSCIRNVKLPHLRRAAVLLLKASALYIDDEDRLQRVIPYVIAMLLDSAAIVRCAALETLCDILPLVRDFPPSDAKIFPEYILPMLSMLPDDPEESVRICYASNIAKLALTAYGFLIRSISLSEAGVLDELSLPQKPLTSSTQTSGRMKRINGDVQLLQLRKSIAEVVQELVMGPKQTPNIRRALLQDIGKLCYFFGVRQSNDSLLPILPAFLNDRDEQLRTVFYEKIVYVCFFVGQRSVEEYLLPYIEQALSDVTESVIVKAVECMTILCKSGFFRKRTLLQMIERAFPLLCYPSEWVRRSVVSFIAASSECLGAVDSYVFLAPVIRPFLRRQPVSLASEKALLSCIKPPVSRQVFYEVLENSRSSDMLERQRKIWYSSSQSKLWEMDLLKKGIDELDSLKNWTDKQQGPGVQQTIGSAFQQPGITDCDKAEAKLRDMGAFMHSDSNGVGHRDTQCLEKLQFSGFMSPNFSGVNSLTYEKPSEGIPLYSFCVDRRGMGIPPAASDPPLPINSLGVSSSAMPWVNPLSKSFNLASSVPAPKLFSGSFSISNGSKQFHRVVHEPDARENETAYINSTFQDLGSSANIKGTSIALEDATAQTDLSGFPSFARASIPDSGWRPRGVLVAHLQEHRSAVNDIAISTDHSFFMSASDDSTVKIWDSRKLEKDISFRSKLTYHLEGSRVLCATMLPGSAQVIIGASDGFIHMFSVDHISRGLGNVVEKYSGIADITKKDIKEGAILNLLNCPVDNYTIMYSTQNCGIHLWDTRSMSNTWTLKATPEEGYASSLASGPCGNWFVSGSSRGVITLWDLRFLIPVNSWKYSHACPIEKMCLFLPPSNASLSSAARPLVYVAAGCNEVSLWNAENGSCHQVLRMANYDSDAEMSDLPWALARPSSKPTSQSDLRRYVNRKYGVDELNEPPPRLPGIRSLLPLPGGDLLTGGTDLKIRRWDHYSPDRSYCICGPNLKGIGNDDFYESKSSFGVQVVQETKRRPLTIKLTAKAILAAAATDSAGCHRDSIVSLASIKLHQRLLLSSGRDGAIKVWK 1530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02548 1530 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1497 1530 - -
Spst4g02548 1530 SMART serkin_6 27 303 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst4g02548 1530 Gene3D - 608 835 IPR011989 -
Spst4g02548 1530 ProSiteProfiles Trp-Asp (WD) repeats profile. 1497 1530 IPR001680 GO:0005515
Spst4g02548 1530 SMART WD40_4 1107 1146 IPR001680 GO:0005515
Spst4g02548 1530 SMART WD40_4 1155 1194 IPR001680 GO:0005515
Spst4g02548 1530 SMART WD40_4 1402 1436 IPR001680 GO:0005515
Spst4g02548 1530 SMART WD40_4 1490 1530 IPR001680 GO:0005515
Spst4g02548 1530 SMART WD40_4 1254 1295 IPR001680 GO:0005515
Spst4g02548 1530 CDD STKc_Vps15 16 303 - -
Spst4g02548 1530 Gene3D Transferase(Phosphotransferase) domain 1 22 300 - -
Spst4g02548 1530 FunFam Protein kinase family protein / WD-40 repeat family protein 619 829 - -
Spst4g02548 1530 SUPERFAMILY ARM repeat 421 818 IPR016024 -
Spst4g02548 1530 Pfam WD domain, G-beta repeat 1110 1146 IPR001680 GO:0005515
Spst4g02548 1530 SUPERFAMILY Protein kinase-like (PK-like) 25 292 IPR011009 -
Spst4g02548 1530 Gene3D - 1219 1530 IPR015943 GO:0005515
Spst4g02548 1530 Pfam Protein kinase domain 29 292 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst4g02548 1530 SUPERFAMILY WD40 repeat-like 1104 1530 IPR036322 GO:0005515
Spst4g02548 1530 Gene3D - 1039 1214 IPR015943 GO:0005515
Spst4g02548 1530 FunFam Protein kinase family protein / WD-40 repeat family protein 1098 1384 - -
Spst4g02548 1530 ProSitePatterns Serine/Threonine protein kinases active-site signature. 145 157 IPR008271 GO:0004672|GO:0006468
Spst4g02548 1530 ProSiteProfiles Trp-Asp (WD) repeats profile. 1114 1146 IPR001680 GO:0005515
Spst4g02548 1530 ProSiteProfiles Protein kinase domain profile. 27 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst4g02548 1530 FunFam phosphoinositide 3-kinase regulatory subunit 4-like 469 608 - -
Spst4g02548 1530 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1114 1146 - -
Spst4g02548 1530 ProSiteProfiles HEAT repeat profile. 691 729 IPR021133 -
Spst4g02548 1530 PANTHER PHOSPHOINOSITIDE 3-KINASE REGULATORY SUBUNIT 4 1 1530 IPR045162 GO:0004674|GO:0016236|GO:0045324
Spst4g02548 1530 FunFam Protein kinase family protein / WD-40 repeat family protein 24 347 - -
Spst4g02548 1530 Gene3D - 473 607 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02548 Spst-Chr4 65601673 65610006 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02548 26 291 EF-hand Containing Proteins AT5G23580 25.448 1.04e-09 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_Pl-Tthe Spst4g02548 Pkinase 1.3e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02548 K08333 - gmx:100818467 2883.98