Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02547 ATGCATTACATGTTCATCTTGTTAGTAGTTCTTCTTTTTCTGCAAAATCCCAGTAGAGTAGATTGCCATACCAAGGGAATTAGACCAAGACGTTATGCTGGTAAACGGTTATCGACCAACATGACTAGAGTGCAGTATTCGGAAGAGCAATTCATGAAATGGGTGAACTTTGTTGGTTCCCTCAAACACTCAGTTTTTAAGGTAGCGAAAAATAAGCTTGTGGCTTCTTACACTTTGCACGTTGATAACGATCCTAGTGCTGGAGATTTTACCTCAATTCAAGAAGCCATTGATTCCCTTCCATTAATCAATCTTGTGAGAGTGGTCATAAAAGTCCATGCAGGTGTCTACACGGAGAAAGTTAACATTCCTGCTTTCAAATCCTACATAACAATAGAGGGAGCTGGTTCAGATGAAACCATTGTTAAATGGAGTGACACTGCTCAAACACCTGGCTCAAATGGGAGGCCATTAGGAACCTATGGTTCAGCAACCTTTGCTGTGAATTCGCCTTATTTCATTGCCAAAAACATCACATTCCAAAACACAACTCCTGTTCCTGCACCGGGAGCAAATGGAAAGCAAGCAGTGGCATTAAGGATTTCAGCAGACACAGCAGCATTCGTAGGCTGCAAATTCTTAGGAGCACAAGACACACTCTATGATCATGTGGGCAGACATTACTACAAGGATTGTTACATCGAAGGCTCTGTTGATTTCATATTTGGCAACTCTCTCTCACTATTTGAGGGATGTCACGTGCATGCTATAGCCCAGAATACAGGAGCAGTAACAGCTCAAGGAAGGAGTAGTATGTTGGAGGACACAGGGTTCTCATTTGTGAACTGTAAGGTCACGGGATCAGGGGCACTGTACCTTGGAAGGGCATGGGGACCCTTTTCTCGTGTGGTCTTTGCATACACATATATGGACAACATCATCATTCCCAAGGGCTGGTATAACTGGGGTGACCCTAACCGTGAAATGACTGTTTTCTATGGGCAGTACAAGTGCACAGGACCTGGAGCAAGCTTTGCAGGGAGAGTATCATGGTCAAGAGAACTCCCTGATGAGGAAGCTTTACCTTTTCTTTCACTTGCCTTCATTGATGGAACTGAATGGATCAAACTGTAG 1134 0.4365 MHYMFILLVVLLFLQNPSRVDCHTKGIRPRRYAGKRLSTNMTRVQYSEEQFMKWVNFVGSLKHSVFKVAKNKLVASYTLHVDNDPSAGDFTSIQEAIDSLPLINLVRVVIKVHAGVYTEKVNIPAFKSYITIEGAGSDETIVKWSDTAQTPGSNGRPLGTYGSATFAVNSPYFIAKNITFQNTTPVPAPGANGKQAVALRISADTAAFVGCKFLGAQDTLYDHVGRHYYKDCYIEGSVDFIFGNSLSLFEGCHVHAIAQNTGAVTAQGRSSMLEDTGFSFVNCKVTGSGALYLGRAWGPFSRVVFAYTYMDNIIIPKGWYNWGDPNREMTVFYGQYKCTGPGASFAGRVSWSRELPDEEALPFLSLAFIDGTEWIKL 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02547 377 Pfam Pectinesterase 86 371 IPR000070 GO:0030599|GO:0042545
Spst4g02547 377 FunFam Pectinesterase 75 377 - -
Spst4g02547 377 SUPERFAMILY Pectin lyase-like 74 376 IPR011050 -
Spst4g02547 377 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 71 376 - -
Spst4g02547 377 ProSitePatterns Pectinesterase signature 2. 234 243 IPR033131 -
Spst4g02547 377 Gene3D - 74 377 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02547 Spst-Chr4 65596355 65599455 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02547 1 375 Carbohydrate Esterase AT5G47500 43.883 1.82e-105 313
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02547 K01051 - gmx:100793314 710.679