Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02543 ATGAAAAAATTTACCGCATCATTTGCCAAAATGCCAATTCTTCCTCTTCTCTCCTTCTTCCTCTTTCTGACCTTTGCAAACTCTGAGTCTCACTCTTTGCTGTATGATGAAGAGCATGCAGTCCTACTGAAGATAAAGCAATACCTGCAAAATCCATCATTCCTCCGTCACTGGATCCCATCAAACTCTTCACATTGCACTTGGCCAGAGATCAGATGCACTAATGGCTCAGTCACTTCACTGACTCTGTTGAACACCAACATCACTCAAACACTGCCACCTTTCCTATGTGACCTCAAAAATCTCACACGTCTAGATTTTCAGTGGAATTTCATTCCTGGGGAGTTCCCAACATCTCTTTACAATTGCTCCAAGCTTGAGTACCTTGACCTCTCACAGAACGTCTTTGTTGGTAAGATTCCTGATGACATTGATCACTTGGCTAGCCTGCGCTTTCTCAGCCTTGGTGGAAACAACTTCTCTGGTGATATTCCAGCCAGCGTTGGAAGGTTGAAGGAGCTAAGAAGTCTTAAACTTCATCAGTGTCTTTTCAATGGTACTTTCCCTGCTGAAATTGGCAATTTGTCGAATCTGGAGTTGTTGCACGTGTTCTCAAACCACATGTTCCCTCCGACAAAGTTGCCATTAAGCTTGACCCAGTTGAACAAATTGAAGTCCTTCTATATGTATGAATCCAACTTGGTAGGGGAAATCCCCCAAACCATTGGACGCATGGTGGCATTGGAGGAATTGGATTTATCAAAAAATGGTTTAAGTGGACAAATTCCCGATGGTTTGTTCCTGCTGCAAAATCTGAGCATACTGTATCTTTACCGGAACAGCCTTTCTGGGGATATACCTGGAGTGGTTGAAGCATTCAACTTGACAGAACTTGATCTTTCAGAAAATAATCTTAGTGGGAAAATACCAGATGATTTGGGAAAGCTCAACAAGTTAACATACTTGAGTTTGTATATGAACCAATTGTCAGGGACGGTACCAGAAAGCATTGGTCGTCTGCCAGCCCTGACTGATTTTGTTGTTTTTCTCAACAATTTTTCAGGTACTCTTCCACCAGATTTCGGTCGGATCTCAAACCTTGAAACGTTTCAGGTTGCATCCAACAGTTTCACAGGAAGGTTGCCAGAGAACTTGTGCTTCTATGGAAGGTTAGTTGGTTTAACTGCTTACGACAATAACCTTAGTGGGGAGTTGCCAGAATCTTTAGCAACTTGCAGTAGCCTACAATATCTGAGGGTTGAAAACAATGAGCTTTCTGGCAACATTCCTAGTGGTCTATGGACATCTTTGCATTTGTCAACATTTATGATAAATGAAAACAAGTTCACTGGTCAGCTTCCCGAAAGATTGCCTGGGAATCTTTCAGTCTTGGCCATTAGTTACAATCAGTTTTCGGGTAGAATTCCACTTGGAGTGTCTTCCTGGAAGAATATTGTTGTGTTCAATGCCAGTAACAACCTCTTCAATGGCAGTATTCCACAGGAGCTAACATCTCTTCCTCACCTAACAACGCTTCTGCTTGATCATAACCAGCTCACAGGACCACTTCCATCAGATATAATATCATGGAAGTCCCTAATAACTCTAGATTTAAGACACAATCAACTCTCTGGAGAAATCCCACCTGCAATTGCTAAGTCGTCTACCCTTATTATTTTGGATTTGTCAGAAAACAGAATATCAGGCCAAATTCCACTTCAACTAGCTCATATGAGACTCACAAATCTCAATCTGTCCTCCAATAATTTGGCAGGAAGGATTCCAAGTGAATTTGAAAATCTTGCGTACGCTAGCAGCTTTTTGAACAATCCGGGTCTCTGTACTGATACTGCAGTACTAAACCTTATCTTGTGCGATTCTAGGCCTCAAAGGACAAGCATCGATAGAAGATCTGCATCTCATGCTATAATCATAAGCCTGGTGGTAGCAGCATCCTTACTGGCTTTGTTGTCATCATTTTTGATGATCAGAGTTTACAGGAAAAGAAAGCAAGAATTGAAAAGGTCATGGAAGCTCACTTCCTTTCAAAGGCTTAGTTTCACAAAAGCAAATATCGTGTCCTCAATGTCAGAACACAATATTATTGGCTGTGGTGGGTACGGTGCAGTATATCGTGTCGGTATTGATGATTCAAACTTTGTTGCAGTGAAAAAGATATGGAGTAGGAGAAAGTTAGAGGAGAAACTTGTAAGTTCATTTCTTGCAGAAGTTGAAATACTGAGCAATATTCGTCATAACAACATTGTGAAGTTGCTATGCTGCATCTCGAATGAGGATTCTCTTCTACTTGTCTATGAGTATCTTGAAAACCATAGCCTTGATAGGTGGCTGCACAACAAAAGTAAGCAAGCAGCTGTGCCAGGTTTAGTCCTTGATTGGCCAAAGAGATTGCATATAGCCATTGGAGCAGCACAAGGTTTGTGCTACATGCATCATGACTGCTTACCACCTGTCGTTCATCGCGATGTGAAAACAAGTAACATTCTGTTGGATTCTAAATTCAATGCAAAAGTTGCTGATTTTGGTCTGGCCAAGATGTTGATGAAGCCAGAAGAACTTGCTACAATGTCAGCTGTGGCTGGCACATTTGGCTATATTGCTCCAGAATATGCTCAAACAACAAGAGTCAATGAGAAGATAGATGTGTATAGCTTTGGAGTTGTCCTATTGGAACTGACAACTGGAAAAGAAGCTAATCATGGGGATGAATACTCATCTCTGGCCGAATGGGCGTGGCGCCACATTCAGGTAGGGACAGATGTAGAAGATATTTTGGATAAAGAAATTAAGGAAGCTTGTTACATGGATGAAATCTGCAACATATTCAAACTTGGGGTCATGTGCACTGCAACACTGCCTGCTAGTAGACCTTCCATGAAGGAAGTCCTGAAAATATTGCTCACATGCAGCAATCCATTCACCAATGGAGAGAATAATGTTGGTTTCTATGATTCTATTCCACTTCTTAAGAACTCAAAATGGGAAAAGCAGGTGGAATATTATACTGATGATGATTGA 3039 0.4133 MKKFTASFAKMPILPLLSFFLFLTFANSESHSLLYDEEHAVLLKIKQYLQNPSFLRHWIPSNSSHCTWPEIRCTNGSVTSLTLLNTNITQTLPPFLCDLKNLTRLDFQWNFIPGEFPTSLYNCSKLEYLDLSQNVFVGKIPDDIDHLASLRFLSLGGNNFSGDIPASVGRLKELRSLKLHQCLFNGTFPAEIGNLSNLELLHVFSNHMFPPTKLPLSLTQLNKLKSFYMYESNLVGEIPQTIGRMVALEELDLSKNGLSGQIPDGLFLLQNLSILYLYRNSLSGDIPGVVEAFNLTELDLSENNLSGKIPDDLGKLNKLTYLSLYMNQLSGTVPESIGRLPALTDFVVFLNNFSGTLPPDFGRISNLETFQVASNSFTGRLPENLCFYGRLVGLTAYDNNLSGELPESLATCSSLQYLRVENNELSGNIPSGLWTSLHLSTFMINENKFTGQLPERLPGNLSVLAISYNQFSGRIPLGVSSWKNIVVFNASNNLFNGSIPQELTSLPHLTTLLLDHNQLTGPLPSDIISWKSLITLDLRHNQLSGEIPPAIAKSSTLIILDLSENRISGQIPLQLAHMRLTNLNLSSNNLAGRIPSEFENLAYASSFLNNPGLCTDTAVLNLILCDSRPQRTSIDRRSASHAIIISLVVAASLLALLSSFLMIRVYRKRKQELKRSWKLTSFQRLSFTKANIVSSMSEHNIIGCGGYGAVYRVGIDDSNFVAVKKIWSRRKLEEKLVSSFLAEVEILSNIRHNNIVKLLCCISNEDSLLLVYEYLENHSLDRWLHNKSKQAAVPGLVLDWPKRLHIAIGAAQGLCYMHHDCLPPVVHRDVKTSNILLDSKFNAKVADFGLAKMLMKPEELATMSAVAGTFGYIAPEYAQTTRVNEKIDVYSFGVVLLELTTGKEANHGDEYSSLAEWAWRHIQVGTDVEDILDKEIKEACYMDEICNIFKLGVMCTATLPASRPSMKEVLKILLTCSNPFTNGENNVGFYDSIPLLKNSKWEKQVEYYTDDD 1012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02543 1012 Pfam Leucine rich repeat 101 160 IPR001611 GO:0005515
Spst4g02543 1012 Gene3D Phosphorylase Kinase; domain 1 678 774 - -
Spst4g02543 1012 ProSitePatterns Protein kinases ATP-binding region signature. 702 725 IPR017441 GO:0005524
Spst4g02543 1012 Pfam Protein kinase domain 698 971 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst4g02543 1012 Gene3D Ribonuclease Inhibitor 292 345 IPR032675 -
Spst4g02543 1012 Gene3D Transferase(Phosphotransferase) domain 1 775 987 - -
Spst4g02543 1012 ProSiteProfiles Protein kinase domain profile. 696 981 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst4g02543 1012 Pfam Leucine rich repeat N-terminal domain 37 73 IPR013210 -
Spst4g02543 1012 ProSitePatterns Serine/Threonine protein kinases active-site signature. 825 837 IPR008271 GO:0004672|GO:0006468
Spst4g02543 1012 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 18 968 - -
Spst4g02543 1012 FunFam Receptor-like protein kinase HSL1 isoform A 35 186 - -
Spst4g02543 1012 SMART LRR_typ_2 99 123 IPR003591 -
Spst4g02543 1012 SMART LRR_typ_2 245 269 IPR003591 -
Spst4g02543 1012 SMART LRR_typ_2 506 530 IPR003591 -
Spst4g02543 1012 SMART LRR_typ_2 316 340 IPR003591 -
Spst4g02543 1012 SMART LRR_typ_2 147 171 IPR003591 -
Spst4g02543 1012 SUPERFAMILY RNI-like 293 602 - -
Spst4g02543 1012 SUPERFAMILY Protein kinase-like (PK-like) 688 974 IPR011009 -
Spst4g02543 1012 SUPERFAMILY L domain-like 43 376 - -
Spst4g02543 1012 ProSiteProfiles Leucine-rich repeat profile. 294 317 IPR001611 GO:0005515
Spst4g02543 1012 SMART serkin_6 696 981 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst4g02543 1012 Gene3D Ribonuclease Inhibitor 346 621 IPR032675 -
Spst4g02543 1012 Gene3D Ribonuclease Inhibitor 188 291 IPR032675 -
Spst4g02543 1012 Gene3D Ribonuclease Inhibitor 35 187 IPR032675 -
Spst4g02543 1012 FunFam Receptor-like protein kinase HSL1 isoform A 299 625 - -
Spst4g02543 1012 Pfam Leucine Rich Repeat 294 316 IPR001611 GO:0005515
Spst4g02543 1012 Pfam Leucine Rich Repeat 579 601 IPR001611 GO:0005515
Spst4g02543 1012 FunFam Kinase family with leucine-rich repeat domain-containing protein 775 988 - -
Spst4g02543 1012 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 191 291 - -
Spst4g02543 1012 FunFam Receptor-like protein kinase HSL1 676 774 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02543 Spst-Chr4 65546398 65549541 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02543 38 973 Receptor kinase-like Gene Family AT5G25930 52.280 0.0 972
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Spst4g02543 Pkinase 1.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02543 - - gmx:100785907 1677.92