Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02542 ATGGCTCTAGAGGGAAGAAAGTGGAATGTAGTAGTATACAAACATGGTAGAGTGAAAATTAGAAATGGGTGGAAAGTCAAAGACTTTGATGGTCCAAGAAAAACCCACACAAGAATCCTACAAGGACAAGTTATGACCCAGAAGCATCAGAGTACAGCTAGCATGCGTTCTCAATCTCAGTTGCATGATCAAGAACATGCAGTCTTACTGAGGATAAAGAAGTACCTTGAAAATCCTTCATTCCTCAGTCACTGGACCTCATCAAACTTCTCCCATTGCTCTTGGCCAGAGATAACATGCACTGATGATTCAGTCACTGGATTGACTTTGTCGAACAATAGCATCGCTCAAACCATACCCTCTTTCATTTGTGACCTCAAAAACCTCACACATGTTGATTTCTACAACAATTTGATTCCTGGGGAGTTCCCAACATATCTCGTCAATTGCTCTAAGATGGAGTACCTAGACCTGTCTATGAACAACTTTGTTGGTAGCATCCCTCGCGACATTGACAACTTCTCTAATTTGCAGTATCTTAACCTTGGTTACACCAATTTCTCTGGCGACATTCCTTCTAGTATTGGAAGTCTAAAGGAACTCAGAGATCTTCAACTTCAAAACTGCCTATTCAATGGAACCATCCCTGCTGAGATTGGCAACTTGTCCAATCTTGAAATCTTGGATTTGTCAGTTAACCCCATGTTCCCTCCTTCGAGTTTGCATGATAACTGGACACGGTTGAACAAGTTGAAGTTTTTTTTTATGTTTGGGTCCAACTTGGTCGGGGAGATCCCTGAAACCATTGGAAACATGGTGGCTTTGGAGAGATTGGATCTATCAGTAAACGATTTAAGTGGACGAATTCCAAGCGGTTTGTTCATGCTGAAGAGTTTGAACATAATATTTCTTTCTAGAAACAATCTTTCCGGGGTAATACCAGATGTGGTTGAAGCATTGAATTTGACCATCATTGACCTTACACAAAATTCTATCTCAGGAAAAATACCAGATGGTTTTGGAAAGCTCCAAAAGTTAACGGGTTTGGCTTTGTCTATGAATAAATTGCAAGGGGAGATACCACGAAGCATAGGCTTTCTTCCATCTCTGGTAGATTTTAAAGTATTTAACAACAATTTATCAGGTACTCTTCCTCCTGACTTTGGCCGCCACTCCATGCTTAGAACCTTTTTGATTTCAACAAATAGTTTTAGTGGAAAGCTACCCGAGAACATATGCTACAATGTTCACTTGCAAAACATATCTGTCTATGAAAATTATCTTAGTGGGGAGTTGCCACAATCACTTGGTAATTGTAGTAGCCTGATAGATCTAAAAATTTATAGTAATGAGTTTTCTGGTAGCATTCCTAGTGGTCTTTGGACGTTCAACTTGTCAAATTTCATGGTGAGTAATAATAAGTTCACTGGTGAGCTTCCTGAGAGATTGTCCCCAAGTATTTCGCGCTTGGAGATAGATTACAATCAGTTTTATGGTAGGATTCCAACTGGAGTGTCTTTATGGACAAATGTGGTTGTGTTTATGGCCAGTAAGAACTACCTTAATGGGAGTATTCCAGAAGGGTTAACAGCTCTTCCCAAGCTAACAATTCTATTGCTTGATCAGAACCAGCTCACAGGACCACTTCCATCAGATATAATATCATGGCAGTCCTTAGTAACTCTAAATTTGAGCCAAAACCAACTCTCTGGACATATTCCGGATTCAATTGGTCATTTACCTGCTCTCAGCCAACTTGACCTGTCCGAAAATCAGTTCTCTGGTCAAATTCCTTATATTGATCCCAGACTCACCTATCTCAATCTATCATCCAATTATTTGACAGGGAGGGTTCCAAGTGAAATTGAAAATTCTGCTTATGACACCAGCTTTTTGGACAATTCTGGCCTCTGTTCTGATACCCCAGCACTGAATCTCACGTTGTGTAATTATAGCCCTCAAAACCAAAGAAAGGACTCATCTTGGTCTGTTGCTTTGATCATAAGTCTGGCGGTAGTGGCGTGTTTCCTGGTTTTGTTGGCATCACTCTTGATCATCAGATTTTACAGAAAAAGAAAGCGTGGATTGGATAGGTCATGGAAGCTCACTTCGTTCCAAAGACTGAGTTTCACTGAATCAAACATAGTGTCGTCACTGACAGAAAATAATATTATTGGCAGTGGTGGATATGGTGCAGTATACCGCGTTGCAATTGATGGTTTAGACTATGTTGCTGTCAAGAAGATTTGGGAAAACAAGAAGCTAGACAAGAAGCTTGAAAGCTCATTTCACACCGAAGTTAAAATATTGAGCAGCATTCGTCACAGAAACATTGTGAAGTTGATGTGTTGTATATCTAATGAGGACTCTATGCTCCTTGTCTATGAGTATGTGGAAAACCGCAGCCTTGACAGGTGGTTGCACCGGAAGAATAAGTCGTCATCAGCTGTTACAGGTTCAGTACATCATGTTGTCCTTGATTGGCCAAAGAGATTGCATATAGCTATTGGAACTGCACAAGGTTTGAGCTACATGCATAATGATTGTTCACCACCTATTGTTCATCGAGATGTGAAAACAAGCAACATTCTTTTGGATGCTCAATTCAATGCAAAAGTTGCTGATTTTGGTCTGGCCAGGATGTTGATGAATCCAGGGGAACTTGCCACCATGTCAGCTGTGATTGGATCATTTGGCTATATGGCTCCAGAGTATATTCAAACAACTCGAGTCAGTGAAAAGATTGATGTCTTCAGCTTTGGGGTCATCCTGTTGGAACTGACAACTGGTAAAGAAGCTAATTATGGTGATGAGCATTCATCTCTTGCAGAATGGGCGTGGCGCCACCAACAGTTAGGAAGCAACATAGAAGATCTCTTAGACAAAGAAGTCATGGAATCTAGTTACTCTGATGGAATGTGTAAGGTTTTCAAACTAGGAGTCATGTGCACTGCAACACTTCCTTCTAGTAGGCCTTCCATGAAAGAGGTTCTTCAAGTATTGCTTACTTGTGATGAATCATTTTCTAAGGGAGAGAGTAATATTGGCAACTTTGATGATGTTCCCCTTCTTAAAAATTCAAAAAGAGAGCACAAGTTGGATATTGATAATGATAGCTAG 3120 0.4035 MALEGRKWNVVVYKHGRVKIRNGWKVKDFDGPRKTHTRILQGQVMTQKHQSTASMRSQSQLHDQEHAVLLRIKKYLENPSFLSHWTSSNFSHCSWPEITCTDDSVTGLTLSNNSIAQTIPSFICDLKNLTHVDFYNNLIPGEFPTYLVNCSKMEYLDLSMNNFVGSIPRDIDNFSNLQYLNLGYTNFSGDIPSSIGSLKELRDLQLQNCLFNGTIPAEIGNLSNLEILDLSVNPMFPPSSLHDNWTRLNKLKFFFMFGSNLVGEIPETIGNMVALERLDLSVNDLSGRIPSGLFMLKSLNIIFLSRNNLSGVIPDVVEALNLTIIDLTQNSISGKIPDGFGKLQKLTGLALSMNKLQGEIPRSIGFLPSLVDFKVFNNNLSGTLPPDFGRHSMLRTFLISTNSFSGKLPENICYNVHLQNISVYENYLSGELPQSLGNCSSLIDLKIYSNEFSGSIPSGLWTFNLSNFMVSNNKFTGELPERLSPSISRLEIDYNQFYGRIPTGVSLWTNVVVFMASKNYLNGSIPEGLTALPKLTILLLDQNQLTGPLPSDIISWQSLVTLNLSQNQLSGHIPDSIGHLPALSQLDLSENQFSGQIPYIDPRLTYLNLSSNYLTGRVPSEIENSAYDTSFLDNSGLCSDTPALNLTLCNYSPQNQRKDSSWSVALIISLAVVACFLVLLASLLIIRFYRKRKRGLDRSWKLTSFQRLSFTESNIVSSLTENNIIGSGGYGAVYRVAIDGLDYVAVKKIWENKKLDKKLESSFHTEVKILSSIRHRNIVKLMCCISNEDSMLLVYEYVENRSLDRWLHRKNKSSSAVTGSVHHVVLDWPKRLHIAIGTAQGLSYMHNDCSPPIVHRDVKTSNILLDAQFNAKVADFGLARMLMNPGELATMSAVIGSFGYMAPEYIQTTRVSEKIDVFSFGVILLELTTGKEANYGDEHSSLAEWAWRHQQLGSNIEDLLDKEVMESSYSDGMCKVFKLGVMCTATLPSSRPSMKEVLQVLLTCDESFSKGESNIGNFDDVPLLKNSKREHKLDIDNDS 1039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02542 1039 Gene3D Ribonuclease Inhibitor 64 172 IPR032675 -
Spst4g02542 1039 ProSitePatterns Protein kinases ATP-binding region signature. 725 748 IPR017441 GO:0005524
Spst4g02542 1039 ProSitePatterns Serine/Threonine protein kinases active-site signature. 853 865 IPR008271 GO:0004672|GO:0006468
Spst4g02542 1039 Pfam Leucine rich repeat N-terminal domain 63 100 IPR013210 -
Spst4g02542 1039 CDD STKc_IRAK 725 1001 - -
Spst4g02542 1039 Gene3D Ribonuclease Inhibitor 461 643 IPR032675 -
Spst4g02542 1039 SUPERFAMILY L domain-like 86 493 - -
Spst4g02542 1039 SMART LRR_typ_2 532 556 IPR003591 -
Spst4g02542 1039 SMART LRR_typ_2 222 248 IPR003591 -
Spst4g02542 1039 SMART LRR_typ_2 367 391 IPR003591 -
Spst4g02542 1039 SMART LRR_typ_2 272 296 IPR003591 -
Spst4g02542 1039 SMART LRR_typ_2 557 580 IPR003591 -
Spst4g02542 1039 SUPERFAMILY Protein kinase-like (PK-like) 712 1002 IPR011009 -
Spst4g02542 1039 FunFam Kinase family with leucine-rich repeat domain-containing protein 701 797 - -
Spst4g02542 1039 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 218 318 - -
Spst4g02542 1039 SMART serkin_6 719 1008 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst4g02542 1039 SUPERFAMILY L domain-like 487 624 - -
Spst4g02542 1039 Pfam Leucine rich repeat 556 593 IPR001611 GO:0005515
Spst4g02542 1039 FunFam Receptor-like protein kinase HSL1 isoform A 62 213 - -
Spst4g02542 1039 FunFam Receptor-like protein kinase HSL1 isoform A 326 649 - -
Spst4g02542 1039 ProSiteProfiles Protein kinase domain profile. 719 1008 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst4g02542 1039 Gene3D Ribonuclease Inhibitor 239 460 IPR032675 -
Spst4g02542 1039 Gene3D Transferase(Phosphotransferase) domain 1 798 1020 - -
Spst4g02542 1039 Gene3D Ribonuclease Inhibitor 173 238 IPR032675 -
Spst4g02542 1039 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 57 996 - -
Spst4g02542 1039 FunFam Kinase family with leucine-rich repeat domain-containing protein 798 1017 - -
Spst4g02542 1039 Gene3D Phosphorylase Kinase; domain 1 696 797 - -
Spst4g02542 1039 Pfam Protein kinase domain 721 999 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst4g02542 1039 Pfam Leucine Rich Repeat 321 343 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02542 Spst-Chr4 65536873 65544641 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02542 59 1001 Receptor kinase-like Gene Family AT5G25930 50.840 0.0 923
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Spst4g02542 Pkinase 3.7e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02542 - - gmx:100798963 1682.54