Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02541 ATGGCACTTCTCAAGCAGGGTAGACTGAGTCTTCTTTCCCCTCCTTTGCAAATCAACTGCGTTTCAAAGCACACACTAAAAACCAGAATAAACACAAACACTCACATGACAATACCATTTTACTATTATCTGATCATCTTCCTTTTCCTGAGCTGTGTACGCTCTCAGACTCAGCTGCAAGATCAAGAACATGCAATCCTACTGCGGATAAAGCAGCACTTACAGAACCCTTCATTCCTCCGTCACTGGACCCCTTCAAACACCCGTCACTGCTCTTGGTCAGAGATCACATGCACTGGTGACTCCGTCACTGGATTGACCCTGTTCAACAGCAACATCAAGCAAACTCTACCAAATTTCATGTGTGACCTCAAAAATCTCTCACATGTTAATTTCAGCACGAATTCCATTCCAGGGGAGTTTCCAACGTTTCTCTATAAATGTTCCAAGCTGGTCTCCCTCGACCTTGAGGGGAATGAATTTACTGGTAGCATTCCTAATGACATAGACAACTTGGTTAACTTGCAGTATCTTAACCTGGGTTCCACCAACCTTAATGGTGACATTCCTGAAAGCATTGGAAGGTTAAAGCAACTGAGATTTCTTCAACTTCACTTTTGTCTATTTAATGGCACTTTTCCTTATGAGAGTATTGCCAACTTGGTCGATCTTGAATTCTTGGACATGTCCTCTAACTTAGTGCTCCCTCCTTTCAAGTTCCCATCAAGCCTGACCCAGTTGAAAAAACTGAAGTTCTTACACATGTACAGTTCCAACCTCTTCGGGGAAATCCCTGAAACCATTGGAGAAATGGTGGCTTTGGAGAACTTGGATTTGTCACGAAGCAATTTAAGTGGACACATTCCTAAAGGTTTGTTCATGCTCAGGAATTTGAGTATACTGTATCTTTTCGAGAACAGTCTCTCTGGGGAGATACCTGGTGTGGTTGAAGCATTGAATTTGACCGACCTCGATCTTGCACAGAACCATCTCACAGGGAAAATACCTCAAGATTTTGGGAAGCTCCAAAAGTTAAGATGGTTGAGTTTGTCTCTCAATCACTTGTCAGGGGAGATTCCACAAAGCTTAGGCCGCCTTGCATCTCTCACACATTTTCATGTCATGTACAATAACTTGTCAGGTATTTTTCCTCCTGATTTTGGTCGCTACTCACAGCTTAAAACATTTGTGATTGCAAATAATAGTTTCAGTGGAAGGCTCCCAGAGAGCTTATGCTATCATGGTCAGTTACTTAATTTATCTGCTTTTAATAATTATCTGACTGGGAAGTTGCCAGAATCACTTGGCCACTGTAGTAGTTTGACGGATTTAAAAATTTATAATAATGAGTTTTCTGGTAGCATTCCTAGTGGGCTTTGGACTTTCAACTTGTCAAGTTTCATGGTGAGCAATAATAAGTTCACTGGTGAACTGCCAGAGAGATTGTCCCCAACTATTTCACGCTTGGAGATAAGTAACAATCAGTTTTCTGGTAGGATTCCAACTGGGGTATCTTCATGGACTAATGTGGTAGTGTTTAAAGCCAGTGAGAACTACCTCAATGGAAGTATTCCAGAGGAGTTAACAAATCTTCCCATGCTAACTACTCTATTGCTTGACCATAACCAACTCACAGGACCACTTCCATCAGATATAATATCATGGAAGTCCCTAGGGAATCTAAATTTGAGCCATAACCAACTTTCTGGACAAATCCCAGTTGTAATTGGTCGATTACCTGTCCTCAATCAGCTTGACCTGTCAGAAAACCAATTCTCAGGCCAAATTCCTTCAATACTTCCAAGACTCACCAATCTCAACCTATCCTCTAATCATTTTACAGGGAGGGTTCCAAGTGAGTTTGAAAATTCAGTGTATTCCACTAGCTTTTTGGATAATTCTGGCCTCTGTGCTGATACCCCAGTACTGAACCTTCGGCTGTGCAATGTTGGCTTTAAAAGGCTAACCAAAGGCTCATCTTGGTCTCTTGCTTTGATTCTGTGCCTGGTGGCGGTGGCCTTCTTACTGGCTTTGTTGATAGCACTCTTACTGGCTTTGTTGACAGCACTCTTGATTGTCAAACTTCACAGAAGAAGGAAACAAGAATTGGATAACTCATGGAAGCTCATTTCCTTTCAAAGGCTGAGTTTCACTGAATCAAACATAGTGTCATCAATGACAGAACATAATGTTATTGGAAGTGGTGGATTTGGCACGGTATACCGTGTCCCGGTCGATGGTTTAGGCTATATTGCTGTTAAAAAGATCTCCAGTAACAGAAAGTTAGACCGAAAGCTAGAGAGTTCATTTCGTGCAGAAGTGAAAATATTGAGCAACATTCGTCATAAAAACATTGTGAAGTTGTTGTGCTGCATCTTTAATGAGGATTCTATGCTCCTTGTTTATGAGTATTTGGAAAACCGTAGCCTAGATAGGTGGCTGCACAATAAGGGCAAGTCATCAGCTGTGTCAGTTTCAGTCCATCATTTTGTGCTTGATTGGCCAAAGAGATTGCAAATAGCCATTGCGGTTGCTCATGGTTTGTGCTACATGCACCATGATTGCTCCCCACCGATTGTTCATCGAGATATAAAAACAAGCAACATCCTTTTGGATGCTCAATTCAATGCAAAAGTTGCTGATTTTGGTCTGGCTAGGATGTTAATGAAACCGGGGGAACTTGCTACCATGTCATCTGTTGTTGGTTCATTTGGCTATATGGCTCCAGAATATGTTCAAACAACGCGAGTTAGTGAGAAGATTGATGTATTCAGCTTTGGGGTTGTCCTACTGGAGCTTACAACTGGTAAAGAAGCTAATTATGGTGATGAGCACTCTTCTCTTGCAGAGTGGGCATGGCGCCACATTATTGTAGGAAGCAAAATAGAAGAGCTGCTAGACAATGATTTCATGGATCCAAGTTACACGAATGAAATGTCCAGTGTTTTCAAACTTGGGGTCTTGTGCACTTCAACACTTCCTGCTAATAGGCCTTCCATGAAGGACGTGCTAAACATGTTGCTCACCATAGGAGAAGGATTTGCTTTTGGAGAGGGGAATCTTAGGCAATGTGATGGTGTTCCTCTTCTTAAGGATTCAAAATGGGAGAGTAGGTTGAATCATGCTGTTGATAATGATAGTGATTAG 3147 0.4172 MALLKQGRLSLLSPPLQINCVSKHTLKTRINTNTHMTIPFYYYLIIFLFLSCVRSQTQLQDQEHAILLRIKQHLQNPSFLRHWTPSNTRHCSWSEITCTGDSVTGLTLFNSNIKQTLPNFMCDLKNLSHVNFSTNSIPGEFPTFLYKCSKLVSLDLEGNEFTGSIPNDIDNLVNLQYLNLGSTNLNGDIPESIGRLKQLRFLQLHFCLFNGTFPYESIANLVDLEFLDMSSNLVLPPFKFPSSLTQLKKLKFLHMYSSNLFGEIPETIGEMVALENLDLSRSNLSGHIPKGLFMLRNLSILYLFENSLSGEIPGVVEALNLTDLDLAQNHLTGKIPQDFGKLQKLRWLSLSLNHLSGEIPQSLGRLASLTHFHVMYNNLSGIFPPDFGRYSQLKTFVIANNSFSGRLPESLCYHGQLLNLSAFNNYLTGKLPESLGHCSSLTDLKIYNNEFSGSIPSGLWTFNLSSFMVSNNKFTGELPERLSPTISRLEISNNQFSGRIPTGVSSWTNVVVFKASENYLNGSIPEELTNLPMLTTLLLDHNQLTGPLPSDIISWKSLGNLNLSHNQLSGQIPVVIGRLPVLNQLDLSENQFSGQIPSILPRLTNLNLSSNHFTGRVPSEFENSVYSTSFLDNSGLCADTPVLNLRLCNVGFKRLTKGSSWSLALILCLVAVAFLLALLIALLLALLTALLIVKLHRRRKQELDNSWKLISFQRLSFTESNIVSSMTEHNVIGSGGFGTVYRVPVDGLGYIAVKKISSNRKLDRKLESSFRAEVKILSNIRHKNIVKLLCCIFNEDSMLLVYEYLENRSLDRWLHNKGKSSAVSVSVHHFVLDWPKRLQIAIAVAHGLCYMHHDCSPPIVHRDIKTSNILLDAQFNAKVADFGLARMLMKPGELATMSSVVGSFGYMAPEYVQTTRVSEKIDVFSFGVVLLELTTGKEANYGDEHSSLAEWAWRHIIVGSKIEELLDNDFMDPSYTNEMSSVFKLGVLCTSTLPANRPSMKDVLNMLLTIGEGFAFGEGNLRQCDGVPLLKDSKWESRLNHAVDNDSD 1048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02541 1048 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 60 217 - -
Spst4g02541 1048 SMART LRR_typ_2 600 623 IPR003591 -
Spst4g02541 1048 SMART LRR_typ_2 271 295 IPR003591 -
Spst4g02541 1048 SMART LRR_typ_2 531 555 IPR003591 -
Spst4g02541 1048 SMART LRR_typ_2 172 196 IPR003591 -
Spst4g02541 1048 SMART LRR_typ_2 342 366 IPR003591 -
Spst4g02541 1048 FunFam Receptor-like protein kinase HSL1 isoform A 325 648 - -
Spst4g02541 1048 SUPERFAMILY L domain-like 66 317 - -
Spst4g02541 1048 SMART serkin_6 726 1009 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst4g02541 1048 FunFam Kinase family with leucine-rich repeat domain-containing protein 708 804 - -
Spst4g02541 1048 Gene3D Phosphorylase Kinase; domain 1 702 804 - -
Spst4g02541 1048 ProSiteProfiles Protein kinase domain profile. 726 1010 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst4g02541 1048 SUPERFAMILY Protein kinase-like (PK-like) 719 1008 IPR011009 -
Spst4g02541 1048 Gene3D Transferase(Phosphotransferase) domain 1 805 1015 - -
Spst4g02541 1048 Gene3D Ribonuclease Inhibitor 318 385 IPR032675 -
Spst4g02541 1048 Pfam Leucine Rich Repeat 150 172 IPR001611 GO:0005515
Spst4g02541 1048 Pfam Leucine rich repeat N-terminal domain 62 98 IPR013210 -
Spst4g02541 1048 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 240 1002 - -
Spst4g02541 1048 Gene3D Ribonuclease Inhibitor 386 650 IPR032675 -
Spst4g02541 1048 ProSitePatterns Protein kinases ATP-binding region signature. 732 755 IPR017441 GO:0005524
Spst4g02541 1048 Pfam Leucine rich repeat 320 379 IPR001611 GO:0005515
Spst4g02541 1048 SUPERFAMILY RNI-like 319 623 - -
Spst4g02541 1048 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 218 317 - -
Spst4g02541 1048 ProSitePatterns Serine/Threonine protein kinases active-site signature. 859 871 IPR008271 GO:0004672|GO:0006468
Spst4g02541 1048 Gene3D Ribonuclease Inhibitor 217 317 IPR032675 -
Spst4g02541 1048 Gene3D Ribonuclease Inhibitor 60 216 IPR032675 -
Spst4g02541 1048 FunFam Kinase family with leucine-rich repeat domain-containing protein 805 1021 - -
Spst4g02541 1048 Pfam Protein kinase domain 728 1005 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02541 Spst-Chr4 65532516 65536823 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02541 57 1011 Receptor kinase-like Gene Family AT5G25930 49.792 0.0 895
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Spst4g02541 Pkinase 6.5e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02541 - - gmx:100819744 1621.29