Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02511 ATGAAGCTCACAGTGAAGACTCTGAAAGGGAGCCATTTCGAAATTAGGGTTCAGCCCTCCGACACTGTTATGGCTGTCAAGAAGAATATTGAAGATGTACAGGGCAAAGATAATTACCCATGTGGACAGCAATTGTTGATTCACAATGGCAAGGTTTTGAAAGATGAAACTACATTGGTTGAGAACAAAGTCTCTGAAGATGGCTTTCTTGTTGTTATGCTCAGTAAGAGTAAAGCGTTGGGTTCTGCTGCAGCTCCATCTATTCAGCCTGCTAGCAATCCTGCTACAACTGTATCAACATCCAATTCCAACCCTGCTTCTGATCCTCCAGTGCAAACTCAGGTTGCAAACAACAGTAGATCTAGCACAGATGCCCCAACTACTAATGTTTCCTCAGATACTTATGGTCAGGCTGCTTCAAATTTAGTTGCTGGCAGTAATCTTGAGCAGACTATTCAACAAATCGTGGACATGGGTGGTGGCAATTGGGACAGAGACACAGTTAGTCGTGCTCTTCGTGCAGCTTATAATAACCCAGAGCGTGCTATAGATTACTTGTATTCTGGAATACCTGAAGCAGCAGAAGTTGCTGTGCCAGTTCCTCAGTACCCAGGTAGTCAAACAACTGAAACAGCTGGGATTACTGCTGGAGCAGTTCCTGTAGGACCTAATTCATCTCCCTTAAATATGTTCCCTCAGGAGACAATTTCTAGTACTGGTGCCGGGCTTGGATCACTGGACTTCCTTAGAAATAATCCCCAGTTTCAAGCATTGCGTTCAATGGTGCAATCCAATCCACAAATTCTACAGCCTGTGCTTCAGGAACTTGGTAAGCAGAATCCCAGTCTTTTAAGACTGATTCAAGAACATCATGGGGAGTTTCTCCAGTTGATAAATGAACCTGTTGAGGGTTCTGAAGGAGATATGTTTGACCAGCCTGAGCAAGACATGCCTCATGCCATCAATGTGACTCCAGCTGAGCAGGAAGCAATTGGAAGGCTTGAGGCTATGGGATTTGATAGAGCCTCGGTGATAGAGGCATTTTTGGCTTGTGACCGTGATGAGCAATTGGCAGCCAACTACTTATTGGAGAATGCTGGAGACTTTGAGGATTAA 1116 0.4453 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLVENKVSEDGFLVVMLSKSKALGSAAAPSIQPASNPATTVSTSNSNPASDPPVQTQVANNSRSSTDAPTTNVSSDTYGQAASNLVAGSNLEQTIQQIVDMGGGNWDRDTVSRALRAAYNNPERAIDYLYSGIPEAAEVAVPVPQYPGSQTTETAGITAGAVPVGPNSSPLNMFPQETISSTGAGLGSLDFLRNNPQFQALRSMVQSNPQILQPVLQELGKQNPSLLRLIQEHHGEFLQLINEPVEGSEGDMFDQPEQDMPHAINVTPAEQEAIGRLEAMGFDRASVIEAFLACDRDEQLAANYLLENAGDFED 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02511 371 SUPERFAMILY Ubiquitin-like 1 88 IPR029071 -
Spst4g02511 371 Gene3D - 318 366 - -
Spst4g02511 371 SMART uba_6 148 188 IPR015940 -
Spst4g02511 371 SMART uba_6 327 364 IPR015940 -
Spst4g02511 371 FunFam UV excision repair protein RAD23 B 236 302 - -
Spst4g02511 371 SUPERFAMILY UBA-like 305 368 IPR009060 GO:0005515
Spst4g02511 371 CDD UBA1_Rad23_plant 142 191 - -
Spst4g02511 371 FunFam UV excision repair protein RAD23 homolog 141 191 - -
Spst4g02511 371 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 325 365 IPR015940 -
Spst4g02511 371 SMART CBM 244 287 IPR006636 -
Spst4g02511 371 SUPERFAMILY XPC-binding domain 243 309 IPR036353 GO:0003684|GO:0006289|GO:0043161
Spst4g02511 371 CDD Ubl_Rad23 1 74 - -
Spst4g02511 371 MobiDBLite consensus disorder prediction 86 133 - -
Spst4g02511 371 PRINTS DNA repair protein Rad23 signature 272 294 IPR004806 GO:0006289
Spst4g02511 371 PRINTS DNA repair protein Rad23 signature 338 352 IPR004806 GO:0006289
Spst4g02511 371 PRINTS DNA repair protein Rad23 signature 353 368 IPR004806 GO:0006289
Spst4g02511 371 PRINTS DNA repair protein Rad23 signature 321 337 IPR004806 GO:0006289
Spst4g02511 371 FunFam UV excision repair protein RAD23 1 80 - -
Spst4g02511 371 Pfam XPC-binding domain 246 301 IPR015360 GO:0003684|GO:0006289|GO:0043161
Spst4g02511 371 NCBIfam UV excision repair protein Rad23 1 370 IPR004806 GO:0006289
Spst4g02511 371 Gene3D - 1 80 - -
Spst4g02511 371 Gene3D - 141 191 - -
Spst4g02511 371 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 146 189 IPR015940 -
Spst4g02511 371 Gene3D - 236 302 IPR036353 GO:0003684|GO:0006289|GO:0043161
Spst4g02511 371 FunFam UV excision repair protein RAD23 homolog 318 366 - -
Spst4g02511 371 SUPERFAMILY UBA-like 145 196 IPR009060 GO:0005515
Spst4g02511 371 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Spst4g02511 371 SMART ubq_7 1 75 IPR000626 GO:0005515
Spst4g02511 371 MobiDBLite consensus disorder prediction 83 133 - -
Spst4g02511 371 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 360 - -
Spst4g02511 371 Pfam UBA/TS-N domain 327 362 IPR015940 -
Spst4g02511 371 Pfam UBA/TS-N domain 148 186 IPR015940 -
Spst4g02511 371 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02511 Spst-Chr4 65215239 65220903 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02511 K10839 - gmx:100778187 671.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00026 5 453441 459056 Spst4g02511 4 65215239 65220903 PCT