Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02493 ATGTTTGACTCTGGTTACAAGTCACAATATATTGGAGGCCAGAAGGAGAAGTTCGTGAGGTTGGATGACCTGGACTCGACTTTGTCACCATCAAGCTCAAGTGGGATGAAAAAATTAAGATTCAACTTAGATTCTTTGCCATTTCCTGGTCGTGGAAAAAAAAAAGCATCGAAATCGTTTAAGCAAGGAGTGAAGAAGAGTTCAGATGGACTAAAAACATTTGGAAGATCACTCAAGACTGGAGTGACTACTTGGGCAGTGTTTCCTGAAGATCTTAAAGTTTCAGAGAAAAAAGTATTTGACCCTCAAGACAAGAACCTTGTGTATTGGAACAAGTTTTTTGAGATTCTATGCATTTTTTCTGTGGCTTGTGATCCCTTCTTCTTTTATCTTCCTTATTTCAACCACAAGTCATTTTGCCTCGCCATAGATAGCAAGCTAGCAAGTTTTGCTGTCACATTGAGAACAATATGCGACGCCATTTATCTCATCCGAATAAGTTTTCAGTTCCGCACTGCTTACATTGCGCCATCCTCTCGGGTATTTGGACGAGGTGAACTTGTCATAGATCCTACAAAAATTGCCAAGAGATATTTACGACGTTACTTCATCGTTGACTTCATTTCTGTGCTGCCTCTACCACAGATTATAGTGTGGAAATATCTTTACAGACCAGGACGTGTAGAGGTATTGGAAACAAAAACGGCACTGCTGAGAATTGTGATCCTGCAATATTTTCCAAGATTTATACGCTTTTTACCTTTAGCTTCAGAAGTGAAAAAGACAGCTGGTGTTTTTTCTGAGAACGCATTGCTTGGGGCCATGTACTATTTGATCTGGTATATGCTTGCTAGTCATATAACTGGTTCTTGCTGGTACTTACTCGCCATTGAACGTAATGACACCTGCTGGCATAATGCTTGTAAAGCAGTTGAAGGGTGCAATCCACATTTCTTGTACTGTGCGAATTCGAACAAGCGTATGGCAGGGTATGATAGTTGGAGAAATGTCAGCGAAACTGTTCTGAAAACTCATTGCTATGTGGAGGATGATAGCTCAGAATTTAGCTATGGGATCTTCTCTCAAGCCATAGAGTCCAATATTGTTGCTTCCATAGAAGTTTTTCCAAAATTCTGTTATTGTTTATGGTGGGGCCTTCAAAACTTGAGTACTCTTGGTCAGGGCCTTCTAACCAGTACATACCCTGGAGAGGTTATGTTTTCCATAGTAATAGCTATTATGGGCCTTATCCTTTTTGCTCTTCTGATTGGAAACATGCAGACCTACCTTCAATCAATGTCAGTTCGTCTTGAGGAAATGAGGATCAAAAGACGCGACTCTGAGCAATGGATGCATCATCGTTTGCTTCCTCCAGAGCTAAGGGAAAGAGTGAGACGCTATGACCAATACAAGTGGCTGAACACCCGTGGCGTAGATGAAGAAAGCTTAGTTCAGAGTCTTCCAAAAGATCTCAGGAGAGATATCAAACGGCATCTTTGTTTGAATTTAGTCAGAAGGGTTCCTCTCTTTGCCAACATGGATGAACGTTTGCTTGATGCTATATGTGAGCGATTGAAGCCCAGTTTATATACAGAGGGAACTTACATAGTGAGGGAAGGGGACCCAGTTAATGAGATGCACTTCATCATACGTGGGCGTCTAGAGAGTGTCACCACTGATGGTGGAAGAAGTGGATTTTTCAACAGAGGTCTTCTGAAGGAAGCTGACTTCTGTGGAGAAGAGCTACTAACATGGGCATTGGATCCCAAATCTGCTGCTAACTTGCCATCATCAACAAGGACGGTGAAGGCTATAAATGAGGTGGAGGCATTTGCTTTGGAAGCAGAGGAGTTGAAGTTTGTTGCATCCCAGTTTAGGCACATCCACAGCAGACAGGTTCAGCACACTTTCCGTTTCTATTCACAGCAATGGAGAACATGGGCTGCTATCTACATTCAAGCTGCATGGAGGAGGCATTGCAGGAGGAAGATTGCAGAACAGCGCAGGAGGGAGGAAGAAGAATTATATGACTCAGATTATGATAACTCTGATGATCCTGCAAGAGCCTTGGTCAAGCATCCTGAACCTGCTTTTACTTCTTCTAGCCTTGGACTTGGTACAACCGTTTATGCTTCTCGCTTCGCTGCAAATGCACTTCGTGGTCATAGGCTTCGTGCTTCAAGTTCCAGGGACATAATCAAACTCCAAAAGCCCCCAGAACCTGACTTCAGTGCTCGTGATGAAAACTGA 2250 0.4271 MFDSGYKSQYIGGQKEKFVRLDDLDSTLSPSSSSGMKKLRFNLDSLPFPGRGKKKASKSFKQGVKKSSDGLKTFGRSLKTGVTTWAVFPEDLKVSEKKVFDPQDKNLVYWNKFFEILCIFSVACDPFFFYLPYFNHKSFCLAIDSKLASFAVTLRTICDAIYLIRISFQFRTAYIAPSSRVFGRGELVIDPTKIAKRYLRRYFIVDFISVLPLPQIIVWKYLYRPGRVEVLETKTALLRIVILQYFPRFIRFLPLASEVKKTAGVFSENALLGAMYYLIWYMLASHITGSCWYLLAIERNDTCWHNACKAVEGCNPHFLYCANSNKRMAGYDSWRNVSETVLKTHCYVEDDSSEFSYGIFSQAIESNIVASIEVFPKFCYCLWWGLQNLSTLGQGLLTSTYPGEVMFSIVIAIMGLILFALLIGNMQTYLQSMSVRLEEMRIKRRDSEQWMHHRLLPPELRERVRRYDQYKWLNTRGVDEESLVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLYTEGTYIVREGDPVNEMHFIIRGRLESVTTDGGRSGFFNRGLLKEADFCGEELLTWALDPKSAANLPSSTRTVKAINEVEAFALEAEELKFVASQFRHIHSRQVQHTFRFYSQQWRTWAAIYIQAAWRRHCRRKIAEQRRREEEELYDSDYDNSDDPARALVKHPEPAFTSSSLGLGTTVYASRFAANALRGHRLRASSSRDIIKLQKPPEPDFSARDEN 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02493 749 Gene3D Helix hairpin bin 436 500 - -
Spst4g02493 749 Gene3D Jelly Rolls 507 627 IPR014710 -
Spst4g02493 749 Pfam Cyclic nucleotide-binding domain 530 619 IPR000595 -
Spst4g02493 749 SMART cnmp_10 509 640 IPR000595 -
Spst4g02493 749 MobiDBLite consensus disorder prediction 730 749 - -
Spst4g02493 749 ProSiteProfiles IQ motif profile. 645 674 IPR000048 GO:0005515
Spst4g02493 749 Gene3D - 111 434 - -
Spst4g02493 749 FunFam Cyclic nucleotide-gated ion channel 1 507 625 - -
Spst4g02493 749 FunFam Cyclic nucleotide-gated ion channel 1 436 500 - -
Spst4g02493 749 CDD CAP_ED 509 640 IPR000595 -
Spst4g02493 749 ProSiteProfiles cAMP/cGMP binding motif profile. 509 592 IPR000595 -
Spst4g02493 749 SUPERFAMILY Voltage-gated potassium channels 102 431 - -
Spst4g02493 749 SUPERFAMILY cAMP-binding domain-like 439 629 IPR018490 -
Spst4g02493 749 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 91 743 - -
Spst4g02493 749 Pfam Ion transport protein 109 436 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02493 Spst-Chr4 65113011 65116370 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02493 6 745 Ion Channels AT1G15990 68.933 0.0 1024
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02493 K05391 - gmx:100810453 1331.24