Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02486 ATGGATTGTTCATCATGGATTAACACTTCCTTGGACCTCAACATTAATCCACGCAGAGTTCATGAAGAAGTTCCCAAGGAGATAGAAAGCAAGCCTTTCTCGCTGGGAATGCCACCCAAGTATAACGTGGAAGAAGAGTCTACCAGTGACTTGGAGGAGGAACTGAAGCGGGTGACGGCAGAAAACAAGAAGTTGGCTGAAATGCTCTCGGTGGTGTGTGAGAACTACAACACTTTGAGAAGCCATTTGATGGAATATATGAGCAAAAATGGTGAGAAGGAGACCAGCCCAACATCAAAGAAAAGGAAGTCTGAAAGCATAAAAAACAATAGTATTTGTGTGATGGGAAATAACAATGGGAACTCCGAGAGCAGCTCCACTGATGAAGAAGAATCTTGCAAGAAACCCAATGAAGAAACCATCAAAGCAAAAATTTCAAGAGTTTATGTCAAGACCGAAGCATCTGACACTACCCTTATTGTAAAAGATGGATACCAGTGGAGGAAATATGGGCAAAAGGTGACCAGAGATAACCCTTGTCCAAGAGCATATTTCAAATGCTCTTTTGCTCCAAGTTGCCCTGTCAAAAAGAAGGTGCAAAGAAGTGTGGATGATCAATCTGTTCTGGTGGCCACTTATGAAGGGGTGCACAACCATCCCCAGGCTTCTTCCCAGATGGAGGCAACATCACGTTCTGGCCGTAGTGTGACCCTTGCTTCAGTGCCTTGTTCAGCATCTCTCAACACTTCCACTCCAACACTTGTTACCCTTGACTTAACAAAATCTAAGGGCAGCAACGATTCCAAGAGCACGAAACCAAAAGTGGATTCACCTAAAGTACAACAGGTTTTGGTGGAACAGATGGCAACTTCTTTGACCACGGATCCTAATTTCAGAGCAGCACTTGTTGCTGCCATCTCAGGAAGATTGTTGCACAATAATTAA 945 0.4381 MDCSSWINTSLDLNINPRRVHEEVPKEIESKPFSLGMPPKYNVEEESTSDLEEELKRVTAENKKLAEMLSVVCENYNTLRSHLMEYMSKNGEKETSPTSKKRKSESIKNNSICVMGNNNGNSESSSTDEEESCKKPNEETIKAKISRVYVKTEASDTTLIVKDGYQWRKYGQKVTRDNPCPRAYFKCSFAPSCPVKKKVQRSVDDQSVLVATYEGVHNHPQASSQMEATSRSGRSVTLASVPCSASLNTSTPTLVTLDLTKSKGSNDSKSTKPKVDSPKVQQVLVEQMATSLTTDPNFRAALVAAISGRLLHNN 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02486 314 MobiDBLite consensus disorder prediction 108 126 - -
Spst4g02486 314 SMART WRKY_cls 161 221 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst4g02486 314 MobiDBLite consensus disorder prediction 30 49 - -
Spst4g02486 314 MobiDBLite consensus disorder prediction 259 279 - -
Spst4g02486 314 Pfam WRKY DNA -binding domain 162 220 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst4g02486 314 Gene3D WRKY domain 144 222 IPR036576 GO:0003700|GO:0006355|GO:0043565
Spst4g02486 314 MobiDBLite consensus disorder prediction 88 137 - -
Spst4g02486 314 SUPERFAMILY WRKY DNA-binding domain 157 221 IPR036576 GO:0003700|GO:0006355|GO:0043565
Spst4g02486 314 ProSiteProfiles WRKY domain profile. 156 222 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst4g02486 314 Coils Coil 41 68 - -
Spst4g02486 314 FunFam WRKY transcription factor 40 146 223 - -
Spst4g02486 314 MobiDBLite consensus disorder prediction 88 107 - -
Spst4g02486 314 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 44 310 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02486 Spst-Chr4 65073661 65075334 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02486 4 314 WRKY Transcription Factor Family AT1G80840 53.727 4.07e-99 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Spst4g02486 WRKY 1.5e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02486 - - gmx:100170678 526.168