Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02481 ATGGGGATTCACTTCGAAGTTTTGGTTTTGATTGGAGCTTGTGTTCGCTTTCTTCAATATTACAGACAGAACATGACAAAGTTGGTGTCTGTTGGGTCCCTGTTGTGTAATAAAAAGTGTGATATGATTGATGATAGATGGGGTGATACATTGGAAGCTGTCCCTTTTGAGCAAAGGCTGGCGAAGGAACAGTTGCTTGGTGATGGAATGGAATGGAAGAACCAGATGTTGCCACATAGCTATAGGAGGAGGCTTCAGGATCTTCTGCATCTCTTGTGTTGTGTCATTCCTTACTTAAAACACTCCTCCAGAAAAGTTGCTGATTCAACTCAATTGGAAAAGCGCAATTCGTGTCATTTTCTTAAACTAGCACTTTTCTTTCCTCCATTTTTGGATGCAGAAAAAACTATGACTTTGACAGGATCATCTTCTGGGCAGCCTCAATTCATTGCCAGCACCGGTAATCGGAGCTTGTCTAATGCGCCGTTGATTGAAAACCCAGGCTCTGGTCAAATTATTGTGCCTGATGTGAGTTTCAATGGCCCTTCTAATGTTACTGGAATGCACCTAGCTGAGCATTGTAGAGCTGAATATGCTCGAGTGCCCAACTTTATCCTTTGGGTGATTGCTGAAATTGCCATAGTGGCCTGTGACATTCCTGAAGTAATTGGGACAGCCTTTGCATTGAACATGCTCTTCAACATACCTGTTTGGATTGGTGTTCTTCTGACAGGACTTAGTACATTGATCCTCTTAGCATTACAGCAATATGGGGTGAGGAAACTTGAATTCTTCATTGCATTTCTAGTATTTACAATTGCTGTTTGCTTTATGGCTGAGCTTGGATATGCAAAGCCGGTGGCCAAAGAAGTTGTGACGGGTCTTTTTGTTCCAAAACTTGAGGGGCATGGTGCCACTGGTCTAGCAATTTCACTCCTTGGGGCAATGGTTATGCCACACAATCTCTTCCTCCACTCAGCGCTGGTGCTTTCCAGGAAAATACCGCGATCAGTTCGTGGAATCAAAGAGGCTTGCAGATTTTACATGATAGAAAGTGCCTTTGCTCTTACAGTGGCCTTCCTCATAAATATTTCTGTTATTTCTGTTAGCGGTGCAGTTTGCAATTCTTCAAACTTAAGTGCTGAAGATCAGAATAGTTGTCAGAATTTGGATTTGAACAAAGCCTCCTTTTTATTAAAAAATGTCTTGGGCAAATGGAGTTCAAAACTATTTGCAATTGCTTTACTTGCGTCAGGTCAAAGTTCCACTATAACAGGAACATATGCAGGGCAATATGTCATGCAGGGATTTCTTGATTTGCGACTGAAATCATGGATTCGGAATCTGCTAACCCGTTGCTTAGCCATTGTTCCTAGTTTGATTGTTGCACTCATTGGTGGCTCTTCTGGAGCTGGGGAGCTCATCATAATTGCATCAATGATCTTATCATTTGAGCTTCCTTTTGCTCTGATTCCACTCCTCAAGTTCACTAGCAGCAAAGCCAAGATGGGAGAACATGTCAACTCAATCACGATTTCGGCTGTTACTTGGATCATTGGTTCCCTCATCATGGGCATAAACATATACTATTTATTGACTAGCTTTGTCAAGTTGCTTATTCATGCTCACTTCAAAATTGTGACCAAAGTATTTCTGGGGATATTTGGATTTTCGGGTGTGGCACTATACATGGGAGGCATAGCGTATTTGGTGTTTCGCAAAAATAAAAAGACTACACACATTTTGGCATTTAGTGCACAGGAAAATCAACAAATGGCGAATGAAGGAGATGTATCAATGTATAGTCTCCCAAGAGAAGACATAGTAAGCATGCAATTGCCTCAAAAAAGGAGTATGGCAGAATTTGATTAA 1872 0.4145 MGIHFEVLVLIGACVRFLQYYRQNMTKLVSVGSLLCNKKCDMIDDRWGDTLEAVPFEQRLAKEQLLGDGMEWKNQMLPHSYRRRLQDLLHLLCCVIPYLKHSSRKVADSTQLEKRNSCHFLKLALFFPPFLDAEKTMTLTGSSSGQPQFIASTGNRSLSNAPLIENPGSGQIIVPDVSFNGPSNVTGMHLAEHCRAEYARVPNFILWVIAEIAIVACDIPEVIGTAFALNMLFNIPVWIGVLLTGLSTLILLALQQYGVRKLEFFIAFLVFTIAVCFMAELGYAKPVAKEVVTGLFVPKLEGHGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSVRGIKEACRFYMIESAFALTVAFLINISVISVSGAVCNSSNLSAEDQNSCQNLDLNKASFLLKNVLGKWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLRLKSWIRNLLTRCLAIVPSLIVALIGGSSGAGELIIIASMILSFELPFALIPLLKFTSSKAKMGEHVNSITISAVTWIIGSLIMGINIYYLLTSFVKLLIHAHFKIVTKVFLGIFGFSGVALYMGGIAYLVFRKNKKTTHILAFSAQENQQMANEGDVSMYSLPREDIVSMQLPQKRSMAEFD 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02481 623 Pfam Natural resistance-associated macrophage protein 185 509 IPR001046 GO:0016020|GO:0030001|GO:0046873
Spst4g02481 623 NCBIfam Nramp family divalent metal transporter 186 500 - -
Spst4g02481 623 PRINTS Natural resistance-associated macrophage protein signature 479 498 IPR001046 GO:0016020|GO:0030001|GO:0046873
Spst4g02481 623 PRINTS Natural resistance-associated macrophage protein signature 259 280 IPR001046 GO:0016020|GO:0030001|GO:0046873
Spst4g02481 623 PRINTS Natural resistance-associated macrophage protein signature 234 253 IPR001046 GO:0016020|GO:0030001|GO:0046873
Spst4g02481 623 PRINTS Natural resistance-associated macrophage protein signature 206 232 IPR001046 GO:0016020|GO:0030001|GO:0046873
Spst4g02481 623 PRINTS Natural resistance-associated macrophage protein signature 419 438 IPR001046 GO:0016020|GO:0030001|GO:0046873
Spst4g02481 623 PRINTS Natural resistance-associated macrophage protein signature 309 332 IPR001046 GO:0016020|GO:0030001|GO:0046873
Spst4g02481 623 PRINTS Natural resistance-associated macrophage protein signature 447 464 IPR001046 GO:0016020|GO:0030001|GO:0046873
Spst4g02481 623 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 185 579 IPR001046 GO:0016020|GO:0030001|GO:0046873
Spst4g02481 623 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 185 503 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02481 Spst-Chr4 65045878 65057353 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02481 151 616 Inorganic Solute Cotransporters AT1G15960 67.939 0.0 704
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02481 K21398 - gmx:100815628 824.313