Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02476 ATGTCAGGTGAAGAGGTTGTGGTTGCAGCTGAGCCAGCTGCTACTTCCATTCCGGGTGAGCCCATGGATATCATGACAGCTTTACAACTTGTTCTTAGAAAATCTCTTGCTTATGGTGGTCTTGCACGAGGCCTTCATGAAGGTGCAAAAGTGATTGAGAAGCATGCTGCCCAGCTCTGTGTTTTGGCAGAGGACTGTGATCAGCCTGACTATGTTAAACTAGTTAAGGCTCTCTGTGCAGAGCACAATGTTAGTCTGCTGACTGTTCCTAGTGCAAAGACCCTTGGAGAATGGGCTGGTTTATGCAAGATTGATTCCGAAGGGAAAGCAAGGAAGGTCACTGGTTGCTCTTGTGTGGTTGTCAAGGATTTCGGTGAGGAACATGAAGCCTATAATGTTGTTCTGCAGCATGTGAAATCCCAATGA 426 0.4671 MSGEEVVVAAEPAATSIPGEPMDIMTALQLVLRKSLAYGGLARGLHEGAKVIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVKSQ 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02476 141 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 27 120 IPR004038 -
Spst4g02476 141 ProSitePatterns Ribosomal protein S12e signature. 27 45 IPR000530 GO:0003735|GO:0005840|GO:0006412
Spst4g02476 141 FunFam 40S ribosomal protein S12 7 141 - -
Spst4g02476 141 PANTHER 40S RIBOSOMAL PROTEIN S12 17 140 - -
Spst4g02476 141 PRINTS Ribosomal protein S12E family signature 86 107 IPR000530 GO:0003735|GO:0005840|GO:0006412
Spst4g02476 141 PRINTS Ribosomal protein S12E family signature 31 44 IPR000530 GO:0003735|GO:0005840|GO:0006412
Spst4g02476 141 PRINTS Ribosomal protein S12E family signature 45 61 IPR000530 GO:0003735|GO:0005840|GO:0006412
Spst4g02476 141 PRINTS Ribosomal protein S12E family signature 111 124 IPR000530 GO:0003735|GO:0005840|GO:0006412
Spst4g02476 141 SUPERFAMILY L30e-like 21 139 IPR029064 -
Spst4g02476 141 Gene3D - 7 141 IPR029064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02476 Spst-Chr4 65007310 65008467 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02476 17 141 Cytoplasmic Ribosomal Protein Gene Family AT2G32060 74.400 3.58e-66 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02476 K02951 - gmx:100305687 268.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00047 5 599369 603815 Spst4g02476 4 65007310 65008467 PCT