Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02473 ATGATTGCTGAGACAAGTGCATCTGTGACAGTGCCGGAAGGTACAGAGAAAAAGGATGGCCCAAAAGAAATGGCCATGAGAGAGGAAATGGATAACGAGGAAGTCCCCTCAGCACCATCCACACCTGCAACTCCAGGGACTCCAGGTGCTCCTCTTTTTGGTGGGCTCAGGTTTGAGAAACCTAATGGGGTTATTAGGAAACCGTCCTTCCTCAAAAGTTGCAAATGTTTCAGTGTTGAAGAATGGACCTTGGAAGATGGAGCCATGCCTAGAGTCTCTTGCTCTTTACCAGCCCAGCCCATCCCTCTCGCTAAAAAGGTTGGAGCTGAGTTTATTGGCACGTTCATTCTCATGTTTGCGGCCATAGGCACTGCTATTGTGAACCAAAAGACACATGGCTCAGAGACTCTAATCGGATGTGCTGCAGCAAATGGACTTGCTGTCATGATCATCATATTCTCCACAGGTCACATATCTGGGGCTCATCTCAACCCCGCTGTCACCATTTCCTTCGCTGCATTAAAGCACTTCCCGTGGAAGAATGTACCAGTGTATATTGGCACACAAATTTTGGCATCAGTAAGTGCTGCATTTGCTCTGAAGGCGGTTTTTCATCCCTTCATGAGCGGTGGAGTGACGGTCCCTTCAGTAGGATATGGGCAAGCTTTCGCCACAGAGTTCATTGTCAGCTTTATTCTCATGTTCGTTGTCACTGCAGTGGCCACCGACACAAGAGCTGTGGGAGAGCTTGCGGGAATCGCGGTGGGAGCCACGGTGATGCTCAACATACTAATAGCCGGGCCAGCAACTGGAAGTTCAATGAACCCTGTTAGAACATTGGGTCCAGCCATTGCTGCAAACAACTACAAGGGCATATGGGTGTATCTCATTGCTCCCATATTTGGAACTCTCTGTGGGGCTGGTGCCTACACTGTGGTCAAGCTGCCTGAGGAAGAGGCAACAAAGCCACCTATTTCACCTCCTGCTACTGTTGGGACCTTCACCACATGA 1011 0.4946 MIAETSASVTVPEGTEKKDGPKEMAMREEMDNEEVPSAPSTPATPGTPGAPLFGGLRFEKPNGVIRKPSFLKSCKCFSVEEWTLEDGAMPRVSCSLPAQPIPLAKKVGAEFIGTFILMFAAIGTAIVNQKTHGSETLIGCAAANGLAVMIIIFSTGHISGAHLNPAVTISFAALKHFPWKNVPVYIGTQILASVSAAFALKAVFHPFMSGGVTVPSVGYGQAFATEFIVSFILMFVVTAVATDTRAVGELAGIAVGATVMLNILIAGPATGSSMNPVRTLGPAIAANNYKGIWVYLIAPIFGTLCGAGAYTVVKLPEEEATKPPISPPATVGTFTT 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02473 336 Gene3D Glycerol uptake facilitator protein. 97 324 IPR023271 -
Spst4g02473 336 MobiDBLite consensus disorder prediction 15 34 - -
Spst4g02473 336 CDD MIP 105 313 IPR000425 GO:0015267|GO:0016020|GO:0055085
Spst4g02473 336 ProSitePatterns MIP family signature. 162 170 IPR022357 -
Spst4g02473 336 PANTHER AQUAPORIN NIP2-1 76 321 IPR034294 -
Spst4g02473 336 MobiDBLite consensus disorder prediction 1 48 - -
Spst4g02473 336 FunFam Aquaporin NIP2-1 94 324 - -
Spst4g02473 336 PRINTS Major intrinsic protein family signature 256 278 IPR000425 GO:0015267|GO:0016020|GO:0055085
Spst4g02473 336 PRINTS Major intrinsic protein family signature 144 168 IPR000425 GO:0015267|GO:0016020|GO:0055085
Spst4g02473 336 PRINTS Major intrinsic protein family signature 181 200 IPR000425 GO:0015267|GO:0016020|GO:0055085
Spst4g02473 336 PRINTS Major intrinsic protein family signature 225 243 IPR000425 GO:0015267|GO:0016020|GO:0055085
Spst4g02473 336 PRINTS Major intrinsic protein family signature 293 313 IPR000425 GO:0015267|GO:0016020|GO:0055085
Spst4g02473 336 PRINTS Major intrinsic protein family signature 105 124 IPR000425 GO:0015267|GO:0016020|GO:0055085
Spst4g02473 336 Pfam Major intrinsic protein 103 310 IPR000425 GO:0015267|GO:0016020|GO:0055085
Spst4g02473 336 SUPERFAMILY Aquaporin-like 102 320 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02473 Spst-Chr4 64988755 64991900 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02473 30 319 Major Intrinsic Protein MIP AT1G80760 76.531 6.20e-158 442
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02473 K09874 - gmx:100798410 536.569