Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02471 ATGGATCTTCAAAGGCAAGAGCCATGCCCTTCTGAAAACTTGAACATCATCACATTTTCAGATACTGTGTCATGCCAAAAATCTTCCATAGACACTCAAACAACGAGGAATCACACACAGAGTGATGATCAAAAACACCCACATGACACAAATCCTTGTGTTTTACTAGATCTTGGTCTCTCCAACAAGGATTCAGGTGATGATGACTCAAAGCCAGAACTCAACCTTCTCAATTGTTTCCATACGAATTTCTCTGAGAATTCATCAGAATCTAGTCAGGGAACTGAACTGGATCCCCGGGTTTTCTCATGCAACTACTGCCAAAGAAAGTTTTATAGTTCTCAGGCTCTTGGGGGACACCAGAATGCACACAAACGTGAAAGAACTTTGGCAAGAAGAGGATACAAAGCAGGTGCAGCAGATTTTGGACACACGTACAACAACGTGCCTTTTCTTCCTTCACATGGCTTGTACAACAGATCACTTGGAATTCAGGTTCATGCTATGATTAACAAACCGTCTCATCAAACACCCTTTTTCGGGTTGTGCCGTACCAATGGGTGGCAGAGGCAGCCTTTGGAATCACAACCAGCAATTGGGAATTTTCGTGTGGGGGCAGAAACTGAGTCATCGTTGGCTGATGGTGTTCCAAAGTTAGGCAAGTTTTCCACAAGGCTGGTGACAGAGGGGTTTGGAGGTTACTGCTTTGGTAGCATTACTCATTTGAAGTCCAAACAAGAGAAGTTGCAGAAGCTTGACTTGTCCCTTAAGCTCTAA 777 0.4376 MDLQRQEPCPSENLNIITFSDTVSCQKSSIDTQTTRNHTQSDDQKHPHDTNPCVLLDLGLSNKDSGDDDSKPELNLLNCFHTNFSENSSESSQGTELDPRVFSCNYCQRKFYSSQALGGHQNAHKRERTLARRGYKAGAADFGHTYNNVPFLPSHGLYNRSLGIQVHAMINKPSHQTPFFGLCRTNGWQRQPLESQPAIGNFRVGAETESSLADGVPKLGKFSTRLVTEGFGGYCFGSITHLKSKQEKLQKLDLSLKL 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02471 258 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 1 258 IPR044246 GO:0009788
Spst4g02471 258 ProSiteProfiles Zinc finger C2H2 type domain profile. 102 129 IPR013087 -
Spst4g02471 258 SUPERFAMILY beta-beta-alpha zinc fingers 99 129 IPR036236 -
Spst4g02471 258 MobiDBLite consensus disorder prediction 29 53 - -
Spst4g02471 258 FunFam Zinc finger protein 2 80 147 - -
Spst4g02471 258 ProSitePatterns Zinc finger C2H2 type domain signature. 104 124 IPR013087 -
Spst4g02471 258 Gene3D Classic Zinc Finger 80 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02471 Spst-Chr4 64976166 64976942 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02471 1 258 C2H2 Transcription Factor Family AT5G10970 39.362 8.34e-43 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst4g02471 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02471 - - gmx:100816861 453.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g02471 4 64976166 64976942 Spst4g02471 4 64976166 64976942 ECH