Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02465 ATGGCCAGACCCCAACAACGTTATCGTGGAGTCAGGCAAAGGCACTGGGGCTCTTGGGTCTCTGAAATTCGCCACCCTTTATTGAAGACTAGAATTTGGCTTGGAACCTTTGAAACTGCAGAAGATGCAGCAAGAGCATATGATGAAGCAGCTAGGCTCATGTGTGGGCAAAAAGCACGCACCAATTTCCCATACAACCCCAATGAACCACATTCATCCTCGTCCAAGCTTCTCTCGGCCACTTTAACGGCTAAGTTACACAAGTGTCACATGGCCTCGCTTTCCCTTCAAATGGCCAAGCAAAATCCACCACAAGACAAAGAGCCTCAACCCTCACAAGGGTCCAATTCATTTACCTCTGCCAATGTCATTGATGCATCAAGCTCTGACACTGGTTTTAGATGGCCAGAGAACAGACACGAGGACTTAAGATGGCTTGAAGGGAATTGGGTTAGCGTGGCGGGCCAAGTTGAAGTTTCCCATCAACAATTTCAGCCAGTTCTTGAAGATGATCACATAGAGCAGATGATTCAGGAGTTGCTTGATTATGGGTCAATTGAGCTTTCCTCTGTTGGCTCAACCTAG 585 0.4735 MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGQKARTNFPYNPNEPHSSSSKLLSATLTAKLHKCHMASLSLQMAKQNPPQDKEPQPSQGSNSFTSANVIDASSSDTGFRWPENRHEDLRWLEGNWVSVAGQVEVSHQQFQPVLEDDHIEQMIQELLDYGSIELSSVGST 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02465 194 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Spst4g02465 194 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Spst4g02465 194 MobiDBLite consensus disorder prediction 99 135 - -
Spst4g02465 194 FunFam Ethylene-responsive transcription factor 2 6 65 - -
Spst4g02465 194 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 6 119 - -
Spst4g02465 194 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Spst4g02465 194 CDD AP2 6 66 IPR001471 GO:0003700|GO:0006355
Spst4g02465 194 MobiDBLite consensus disorder prediction 99 133 - -
Spst4g02465 194 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677
Spst4g02465 194 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Spst4g02465 194 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Spst4g02465 194 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02465 Spst-Chr4 64953626 64954406 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02465 1 191 AP2-EREBP Transcription Factor Family AT5G25190 61.780 2.23e-72 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Spst4g02465 AP2 1.1e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02465 - - gmx:100527365 346.665