Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02457 ATGAACGGTGAAATCTTCTTACACGCGCCCACCACCACAACCGCTAACTTTTTGCTTCCCAAACCCGAAACGGCGTCGTCTCAGTCGCTGGACCCGTCGCTACGCTACGAAACGGCGCTCGAAGGGATCGCAGCGGTTGTTGGAGAACACGTTCTGTTTGGGACGACGTCGTCGTCGACGTCGTTGCATGATTCGGAGACGCCTAAGAAAACAGGTGGTGTGTCGGTGAACAAGAGCTACCGAGGAGTGAGAAAGAGACCGTGGGGGAGGTGGTCGGCGGAGATACGCGACAGGATCGGGCGGTGCCGCCACTGGCTAGGGACCTTTGACACGGCGGAGGAAGCGGCGCGTGCGTACGACGCGGCGGCGAGGCGACTCAGAGGCGCGAAGGCGAGGACCAACTTCAAGATACCCTCGGTGTTGCCACTTTCTCCGTCGTCTTCGGAAGGTGTTCATGGTGGTGCCGTGAAGCCGAAAGCTGCGCGCAATAACGCTAGGAAGTGTTCCTCCGTGGAACAATTGTTCAGCGGGGTGCCTCAAAGTTCGAAGAAATGA 555 0.5856 MNGEIFLHAPTTTTANFLLPKPETASSQSLDPSLRYETALEGIAAVVGEHVLFGTTSSSTSLHDSETPKKTGGVSVNKSYRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARRLRGAKARTNFKIPSVLPLSPSSSEGVHGGAVKPKAARNNARKCSSVEQLFSGVPQSSKK 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02457 184 Gene3D AP2/ERF domain 78 137 IPR036955 GO:0003700|GO:0006355
Spst4g02457 184 FunFam Ethylene-responsive transcription factor 2 78 137 - -
Spst4g02457 184 PRINTS Ethylene responsive element binding protein signature 102 118 IPR001471 GO:0003700|GO:0006355
Spst4g02457 184 PRINTS Ethylene responsive element binding protein signature 80 91 IPR001471 GO:0003700|GO:0006355
Spst4g02457 184 ProSiteProfiles AP2/ERF domain profile. 79 136 IPR001471 GO:0003700|GO:0006355
Spst4g02457 184 SMART rav1_2 79 142 IPR001471 GO:0003700|GO:0006355
Spst4g02457 184 MobiDBLite consensus disorder prediction 57 76 - -
Spst4g02457 184 Pfam AP2 domain 79 128 IPR001471 GO:0003700|GO:0006355
Spst4g02457 184 Coils Coil 112 132 - -
Spst4g02457 184 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 61 160 - -
Spst4g02457 184 CDD AP2 78 137 IPR001471 GO:0003700|GO:0006355
Spst4g02457 184 MobiDBLite consensus disorder prediction 142 184 - -
Spst4g02457 184 SUPERFAMILY DNA-binding domain 79 136 IPR016177 GO:0003677
Spst4g02457 184 MobiDBLite consensus disorder prediction 57 74 - -
Spst4g02457 184 MobiDBLite consensus disorder prediction 166 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02457 Spst-Chr4 64895743 64896297 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02457 20 142 AP2-EREBP Transcription Factor Family AT1G80580 58.779 3.04e-31 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Spst4g02457 AP2 1.8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02457 - - gmx:102667667 273.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g02457 4 64895743 64896297 Spst4g02457 4 64895743 64896297 ECH