Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02455 ATGGGGGAGCCATGCCAAAAATATTGGTTCTCTGATATGGAAATACAAGATTTTGATTTCTTTAACCAAGGCCACAAGATTGAATCACTGGATGTTGAGGGACAAATCTTTCGGGAGATCATGCATCAGCCAGGTTTCTCTTCTGACAGCGAAACTCACTCTCCCAAAGTTCAAAGTAAATCAAACCACGGTGGTTGTAGTTACACAGCCCTCACCAGCAACAAGAGTAGCAACCTTGTGATGAAGAGCAACAGCTCCAGCTTCATCTTCTCATCACAATATGCACCTGAGAAACCTGCCACAGCCTCTTCTCCAACTGCGTACATTCTTTCTTTCGATGATTCCACCGTAGTTGCGGCTACTTGCCAAACCTACGAAGGAAAACAGCCGTACCAAGAGGATGTAGTATTAGGGAGTGGTGGCGCATGTCTTCCCTCAAAAGTGGTCTCAGAAAAATATGACATTGAACCTAAGGCCAACCCAACAACAAGAAAAGGTAGAAGTTCTGCAGAGACACATGACCATATTATGACTGAGAGAAAAAGGAGACGGGAACTGACAGAGAGATTCATTGCACTTTCAGCCACCATACCTGGTTTGAAGAAGATTGACAAGGCCACTATACTTAGCGAAGCAATCACTTATGTGAAACGACTTAAAGAACGAGTAAGAGAGCTAGAAGAACAATGTAAGAGGACAAAGCTAGAGTCAGTGTCATTCGTTCATCAGAGATCCGACATTGCTAGTGACAAAGGCACAACTTCTGGTGCAGTGAAATCTGATGACTGCTATAGAACCAGTGAAGCACTCCCTACAGTGGAAGCAAGAGTGTTTCAAAAAGATGTACTCATCCGGATTCACTGCAAGATGCAAAATGGCATTTTGATCAAAATCTTGGACCATCTTAATACTCTTGATCTCTCCACGACTAGCAACAGTGTAATGCCATTTGGATGTTCAACTCTTGACATCAGCATTATTGCTCAGATGGGTGACAAATTCAACGCAACAATGAATGATCTAGTGAAAAACCTGAGACTAGTTCTCTTGCAGTCATCTGAATTACAAGAATGA 1074 0.4274 MGEPCQKYWFSDMEIQDFDFFNQGHKIESLDVEGQIFREIMHQPGFSSDSETHSPKVQSKSNHGGCSYTALTSNKSSNLVMKSNSSSFIFSSQYAPEKPATASSPTAYILSFDDSTVVAATCQTYEGKQPYQEDVVLGSGGACLPSKVVSEKYDIEPKANPTTRKGRSSAETHDHIMTERKRRRELTERFIALSATIPGLKKIDKATILSEAITYVKRLKERVRELEEQCKRTKLESVSFVHQRSDIASDKGTTSGAVKSDDCYRTSEALPTVEARVFQKDVLIRIHCKMQNGILIKILDHLNTLDLSTTSNSVMPFGCSTLDISIIAQMGDKFNATMNDLVKNLRLVLLQSSELQE 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02455 357 PANTHER BHLH TRANSCRIPTION FACTOR 44 351 - -
Spst4g02455 357 Coils Coil 209 236 - -
Spst4g02455 357 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 174 241 IPR036638 GO:0046983
Spst4g02455 357 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 170 219 IPR011598 GO:0046983
Spst4g02455 357 MobiDBLite consensus disorder prediction 45 64 - -
Spst4g02455 357 Pfam Helix-loop-helix DNA-binding domain 175 219 IPR011598 GO:0046983
Spst4g02455 357 Gene3D - 162 236 IPR036638 GO:0046983
Spst4g02455 357 MobiDBLite consensus disorder prediction 158 181 - -
Spst4g02455 357 SMART finulus 176 225 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02455 Spst-Chr4 64886783 64888598 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02455 9 349 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 33.621 2.13e-43 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst4g02455 HLH 4e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02455 - - gmx:100777846 515.383