Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02454 ATGGAGTTCGACGACGATTTCTTCGACAACTTTCACACCATCCACGATCACGATTTCCTCGCTGATATCATCCTCACGCCCACCGCCGCCGCCTGCTCTTCCGAGACCAAAAGCTATCACTCCGTCCACAACAACACTTCCTTCCTCCCCAACGCCTTAGACGCCGCCGTTTTGTCACCTTCCAAACGCCCTCGCTTTTCCTCTCCCAGGACTTACATTCTCTCCTTCGATAACTCAACCGTCGTACCCGCCACACCCCAACCCTCTCTCCCTTCTTCTCCCCCTTTACCCGCTGAACCTCATGGGGGCCCACGCCCCACTTCCCGGCCCAATTCCAAGAGGGCCCGAACCTCTTCTCAGACTGTCGATCACATTATGGCCGAGCGACGAAGAAGGCAGGAACTCACCGAGAGGTTCATTGCACTCTCGGCCGCCATTCCCGGCTTGAACAAGACAGACAAGGCTTCTGTGCTGCGAGCAGCGATCGATTATGTGAAACAACTTCAAGGGAAGGTACAAGAGCTAGAGAATCAAAACAAAAAGAGTACAGCAGGGACAGTAATATTGTTGAACAAAACCGATGCAAATGGAAATGAAGACACCACCAACTCCACTGAAACGAACTGTAGCATACTTCCGGAGATGGAAGCAAGAGTGTTGGGGAAGGAGGTGCTCATTGAGATCCACTGTGAGAAAGAATACGGTGTTGAGCTAAAGCTATTAGACCACCTTGAAAATCTTCATCTCTGTGTCACCGGAAGCAGTGTCTTGCCATTTGGGAATTCCGCCCTCTGCATTACCATCACAGCTCAGATGGGTGAGGCGTACCGTATGACAGTGAATGATCTTGTGAAAAACCTTAGACAAGTGCTCTCAAAGTCACATGTGCTAAGCGACAGTGATCCGTACTAG 912 0.5099 MEFDDDFFDNFHTIHDHDFLADIILTPTAAACSSETKSYHSVHNNTSFLPNALDAAVLSPSKRPRFSSPRTYILSFDNSTVVPATPQPSLPSSPPLPAEPHGGPRPTSRPNSKRARTSSQTVDHIMAERRRRQELTERFIALSAAIPGLNKTDKASVLRAAIDYVKQLQGKVQELENQNKKSTAGTVILLNKTDANGNEDTTNSTETNCSILPEMEARVLGKEVLIEIHCEKEYGVELKLLDHLENLHLCVTGSSVLPFGNSALCITITAQMGEAYRMTVNDLVKNLRQVLSKSHVLSDSDPY 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02454 303 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 119 168 IPR011598 GO:0046983
Spst4g02454 303 PANTHER BHLH TRANSCRIPTION FACTOR 33 293 - -
Spst4g02454 303 SMART finulus 125 174 IPR011598 GO:0046983
Spst4g02454 303 Coils Coil 158 185 - -
Spst4g02454 303 Gene3D - 117 186 IPR036638 GO:0046983
Spst4g02454 303 Pfam Helix-loop-helix DNA-binding domain 123 169 IPR011598 GO:0046983
Spst4g02454 303 MobiDBLite consensus disorder prediction 87 104 - -
Spst4g02454 303 MobiDBLite consensus disorder prediction 83 126 - -
Spst4g02454 303 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 118 180 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02454 Spst-Chr4 64881553 64883310 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02454 50 292 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 40.149 2.36e-44 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst4g02454 HLH 5.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02454 - - vun:114166804 369.777