Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02453 ATGCCCTCATTACTTCCTCATATGATGGAGGACTCATGGCAAAACTGGCTTTCTTATTTGGGAATGAATGCGAACTGTGGCTACACCATCGGTGTACCCTTTGAAGAGATGGTATGGTTGAACAGTAGGCAGGGTTGTGATAGCCCTAACAATGAGGTAACATTTAATGGGGTAAATGAGGAACACTCAGATTGTGTAGGGAAGCATGAGGAGTTGGAGGAGAAGGGAAGGGAGAAGAGAGGAACAAAAAGGGTAAGAACCTCTTCTGAGATAGAATATCACCTAATGTCAGAGAGAAAAAGGAGACAGGATATAGCAGAGAAATTCATTACACTCTCAGCCACCATACCTGGCTTGAAGAAGAGAGACAAGGCCTCTATACTTGGGGAAGCCATAAAGTACATGCGACAACTTCAACAACGCATAGCAGTGTTGGAAAAAACGAGTAATAATAACAGTGAAAAGGCGTTAATCATCACTAAAACACAGCTTTGTTGGGCATCATGTGAAGCAAACTCTAACAGTGAAGTGGTCCCTGAAGTTGAAGCAAGAGGGTTAGAGAATGAAGTGCTGATTAGAATCTACTGTGAGAAACAAAAGGGCATCATTCTCAACTTAATGACCCTTCTAAAACATGTTCATCTGTCAGTAACCAGTAGCAGCATATTGCCATTTGGAAATTCTCTTCTCAACATCATCGTAGTTGCTCAGATAAGTGAGAAGTACAACTTGACGGTATCTGATTTGGTTAATACGTTGAAGCAGGATCTTTTGAAGTTTTATAAGGTGTAA 792 0.4116 MPSLLPHMMEDSWQNWLSYLGMNANCGYTIGVPFEEMVWLNSRQGCDSPNNEVTFNGVNEEHSDCVGKHEELEEKGREKRGTKRVRTSSEIEYHLMSERKRRQDIAEKFITLSATIPGLKKRDKASILGEAIKYMRQLQQRIAVLEKTSNNNSEKALIITKTQLCWASCEANSNSEVVPEVEARGLENEVLIRIYCEKQKGIILNLMTLLKHVHLSVTSSSILPFGNSLLNIIVVAQISEKYNLTVSDLVNTLKQDLLKFYKV 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02453 263 PANTHER BHLH TRANSCRIPTION FACTOR 69 259 - -
Spst4g02453 263 Coils Coil 135 155 - -
Spst4g02453 263 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 92 152 IPR036638 GO:0046983
Spst4g02453 263 Gene3D - 89 160 IPR036638 GO:0046983
Spst4g02453 263 Pfam Helix-loop-helix DNA-binding domain 94 139 IPR011598 GO:0046983
Spst4g02453 263 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 89 138 IPR011598 GO:0046983
Spst4g02453 263 SMART finulus 95 144 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02453 Spst-Chr4 64877001 64878889 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02453 66 260 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 35.577 2.52e-39 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst4g02453 HLH 8.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02453 - - gmx:100778916 302.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00053 5 635116 641418 Spst4g02453 4 64877001 64878889 PCT