Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02452 ATGGAGGAGTCAGGGGAAAATTGGCCTTCGGATTCTTATTTGGAAGTAGGCGATGACGTCGACGATTTGTGTTTTGATGACGGAGAATTTGCGAGTGAGGATGATGAGGTCGATTCCTTTTCCGAGATGAGGAAGATCCACAGAAAACAGAGGCAACAGGAACTCACGGAGAGGTTCCTTGCACTCTCAGCCACCATACCTGGCTTCGAAAAGATGGACAAGACTTCGATCCTGGACAAAGCGAGCAACTATGTGACACAACTTGAGCAACGTGTGAGAGAGCTGGAGCAAGAAGTTCAATCCAGCAACGTTTGTGTCACCAGCAGCAGCTCTTGCGAAGTGAACTCCAATGGCTATTACCATGGATCAAATCAAATTCTACCCGAAGTCAAAGTGAAAGTGTCACAGAAGGATGTGCTCATCATAGTTCACTGTGATAAACAAAAAGGAATCATGCTCAAAATACTGTCTGTCCTCGAAAGTATCAATCTCTCTGTAGTCAATAGCAGCGTCTTGCGATTTGGAAAGTCCAAACTCGAGATCACAATTGTTGCTCAGATGGGTGAGGGATACAAGATGGGAGTGGATGAACTAGTGAAGACCCTGAGATTAGCCATCTTGACTCAGTAG 630 0.4556 MEESGENWPSDSYLEVGDDVDDLCFDDGEFASEDDEVDSFSEMRKIHRKQRQQELTERFLALSATIPGFEKMDKTSILDKASNYVTQLEQRVRELEQEVQSSNVCVTSSSSCEVNSNGYYHGSNQILPEVKVKVSQKDVLIIVHCDKQKGIMLKILSVLESINLSVVNSSVLRFGKSKLEITIVAQMGEGYKMGVDELVKTLRLAILTQ 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02452 209 SMART finulus 44 94 IPR011598 GO:0046983
Spst4g02452 209 Gene3D - 37 103 IPR036638 GO:0046983
Spst4g02452 209 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 39 88 IPR011598 GO:0046983
Spst4g02452 209 PANTHER BHLH TRANSCRIPTION FACTOR 48 207 - -
Spst4g02452 209 Coils Coil 78 105 - -
Spst4g02452 209 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 44 104 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02452 Spst-Chr4 64867303 64872198 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02452 46 206 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 38.983 1.31e-31 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02452 - - vum:124835915 263.462
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g02452 4 64867303 64872198 Spst5g00054 5 646049 647909 PCT