Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02413 ATGGCCCAAATTCTGCTTCATGGGACTCTCCACGTCACCATCTACGAGGTTGATAAGCTTCATGCTGGGGGTGGTGGCAATTTTCTCACCAAGCTCAAGCAAAACATTGAGGAGACTGTAGGTATTGGAAAGGGAGTTACCAAACTCTATGCAACCATTGATCTGGAGAAGGCAAGAGTAGGAAGGACTAGAATTATAGAAAATGAACATACTAATCCCAAATGGTGTGAGTCTTTTCACATTTATTGTGCCCATGTGGCTTCAAATATTATATTCACTGTGAAAGATGATAATCCCATTGGGGCAACTTTAATTGGAAGAGCATATGTGCCTGTTTCTGAGGTCTTGGATGGCCACGAAATAGATAGGTGGGTTGAAATCCTGGACAAGGAGAAAAATCCAATAGAAGAGGGCTCAAAGATCCGTGTGAAGATGCAATATTTTGATGTCACAAAAGACCGCAACTGGGCTAGAGGCATTAGAAGTCCTAAATACCCTGGAGTACCGTATACTTTCTTCTCACAGAGGAAAGGATGTAAGGTATTTCTGTACCAAGATGCTCATGTACCTGATAACTTTGTACCTAAAATAACTCTTGCTGGAGGCAAGAATTATGAGGCTCATAGGTGTTGGGAGGATATATTTGATGCGATCACTAATGCAAAACACTTGATATACATTACTGGCTGGTCCGTTTATACTGAAATTTCCTTGGTAAGGGATTCTAGGCGGCCGAAGCCTGGGGGAGACCAAACACTTGGGGAGCTTCTCAAGCAAAAGGCAAGTGAAGGTGTTAGGGTATTGATGCTCGTTTGGGATGATAGAACATCAGTTGGTTTGTTGAAAAAAGATGGACTGATGGCTACTCACGACGAAGAAACTGCACAGTTCTTCAATGGCACTGATGTGCACTGTGTATTATGTCCCCGCAATCCTGATGACGGTGGGAGCATTGTTCAAGATTTACAAATTTCTACCATGTTTACTCATCACCAGAAGATTGTGGTGGTTGACGGTCCATTGCCAGGTGGAGGAGGGTCAGACAAGCGAAGAATTGTTAGTTTTGTTGGGGGTCTCGACCTCTGCGATGGAAGATACGACACTGCCTTCCACTCACTTTTCAGAACCTTAGACACAGCACACCATGATGATTTTCATCAGCCTAACTTTCCTGGGGCTGCAATCACAAAAGGTGGTCCCCGGGAACCATGGCATGACATCCACTCCCGGGTTGAAGGACCCATAGCTTGGGATGTTTTGTTCAACTTTGAGCAGAGATGGAGAAAGCAAGGTGGGAAGGATTTACTTGTTCAAATGAGAGAGCTTGAAGATGTCATCATTCCTCCATCCCCAGTAACGTTTCCTGAAGATCATGAGACATGGAATGTTCAGTTATTTAGATCTATTGATGGTGGGGCTGCTTTTGGGTTTCCAGATACTCCTGAAGATGCTGCCAGAGCCGGGCTTATTAGTGGGAAGGATAACATCATTGATCGTAGCATTCAAGATGCTTATATTAACGCTATCCGACGTGCCAAGGATTTCATCTATATTGAAAATCAATATTTCCTTGGAAGCTCTTTTGCTTGGAGTGGTGGCGATATTAAGCGTGAAGACATTGGTGCATTGCATATAATCCCAAGGGAACTTTCTCTTAAGATTGTTAGTAAGATTGAAGCTGGGGAAAGGTTCTCCGTGTATGTTGTAGTCCCTATGTGGCCAGAAGGTGTCCCAGAAAGTGCATCAGTTCAGGCAATATTGGACTGGCAAAAGAGAACAATGGAGATGATGTACAAGGACATTACTCAGGCACTCAGGGCCAAGGGAAGTGATGAAGATGCCCGAAACTATTTGACATTCTTCTGCCTTGGAAATAGAGAGGTGAAGAAATCAGGAGAATACGAGCCTGCTGAAAAACCAGATGCTGAATCAGATTATGAGAGAGCTCAAGCAGCCCGGAGATTCATGATTTATGTTCATACCAAGATGATGATTGTTGACGATGAGTACATAATCATTGGATCTGCCAACATCAACCAGAGGTCAATGGATGGTGCTAGGGACTCTGAGATTGCCATGGGTGCTTATCAGCCCTATCATTTGGCTACAAGACAGCCAGCACGTGGTCAGGTCTATGGTTTCCGCATGTCATTGTGGTATGAGCACCTTGGCATGCTTCATGATTCCTTCCTCAGGCCAGAAAGTGAAGAATGCATTAGTAAGGTGAACCAGATTGCTGACAAATATTGGGATCTGTATTCTAGTGAGTCACTTGAGCGTGACCTTCCCGGTCACCTTCTTCGCTACCCTATTGGGGTTTCTACTGAAGGAGAAGTTACTGAGCTGCCAGGATTTGAATTCTTCCCTGACACCAAGGCTCGCATTCTTGGTGCCAAAGCTGACTACCTCCCCCCTATCCTCACTACTTAG 2430 0.4449 MAQILLHGTLHVTIYEVDKLHAGGGGNFLTKLKQNIEETVGIGKGVTKLYATIDLEKARVGRTRIIENEHTNPKWCESFHIYCAHVASNIIFTVKDDNPIGATLIGRAYVPVSEVLDGHEIDRWVEILDKEKNPIEEGSKIRVKMQYFDVTKDRNWARGIRSPKYPGVPYTFFSQRKGCKVFLYQDAHVPDNFVPKITLAGGKNYEAHRCWEDIFDAITNAKHLIYITGWSVYTEISLVRDSRRPKPGGDQTLGELLKQKASEGVRVLMLVWDDRTSVGLLKKDGLMATHDEETAQFFNGTDVHCVLCPRNPDDGGSIVQDLQISTMFTHHQKIVVVDGPLPGGGGSDKRRIVSFVGGLDLCDGRYDTAFHSLFRTLDTAHHDDFHQPNFPGAAITKGGPREPWHDIHSRVEGPIAWDVLFNFEQRWRKQGGKDLLVQMRELEDVIIPPSPVTFPEDHETWNVQLFRSIDGGAAFGFPDTPEDAARAGLISGKDNIIDRSIQDAYINAIRRAKDFIYIENQYFLGSSFAWSGGDIKREDIGALHIIPRELSLKIVSKIEAGERFSVYVVVPMWPEGVPESASVQAILDWQKRTMEMMYKDITQALRAKGSDEDARNYLTFFCLGNREVKKSGEYEPAEKPDAESDYERAQAARRFMIYVHTKMMIVDDEYIIIGSANINQRSMDGARDSEIAMGAYQPYHLATRQPARGQVYGFRMSLWYEHLGMLHDSFLRPESEECISKVNQIADKYWDLYSSESLERDLPGHLLRYPIGVSTEGEVTELPGFEFFPDTKARILGAKADYLPPILTT 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02413 809 ProSiteProfiles C2 domain profile. 1 125 IPR000008 -
Spst4g02413 809 Pfam Phospholipase D Active site motif 656 682 IPR001736 GO:0003824
Spst4g02413 809 Pfam Phospholipase D Active site motif 326 365 IPR001736 GO:0003824
Spst4g02413 809 SUPERFAMILY Phospholipase D/nuclease 151 445 - -
Spst4g02413 809 PIRSF PLD_plant 1 809 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Spst4g02413 809 FunFam Phospholipase D delta 201 445 - -
Spst4g02413 809 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 655 682 IPR001736 GO:0003824
Spst4g02413 809 Pfam C2 domain 8 127 IPR000008 -
Spst4g02413 809 Gene3D Endonuclease Chain A 198 445 - -
Spst4g02413 809 Pfam Phospholipase D C terminal 728 799 IPR024632 -
Spst4g02413 809 Gene3D C2 domain 6 158 IPR035892 -
Spst4g02413 809 PANTHER PHOSPHOLIPASE D 4 797 IPR015679 -
Spst4g02413 809 SMART pld_4 326 365 IPR001736 GO:0003824
Spst4g02413 809 SMART pld_4 655 682 IPR001736 GO:0003824
Spst4g02413 809 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 326 365 IPR001736 GO:0003824
Spst4g02413 809 Gene3D Endonuclease Chain A 486 700 - -
Spst4g02413 809 CDD PLDc_pPLDalpha_2 493 702 - -
Spst4g02413 809 SMART C2_3c 9 124 IPR000008 -
Spst4g02413 809 SUPERFAMILY Phospholipase D/nuclease 453 739 - -
Spst4g02413 809 CDD C2_plant_PLD 2 148 - -
Spst4g02413 809 FunFam Phospholipase D 468 701 - -
Spst4g02413 809 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 6 150 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02413 Spst-Chr4 64568525 64572099 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02413 1 809 Phospholipase D Gene Family (Wang group) AT3G15730 80.988 0.0 1398
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02413 K01115 - gmx:100786410 1541.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g02413 4 64568525 64572099 Spst5g00095 5 964004 968883 ECH
Spst9g00791 9 6816877 6820097 Spst4g02413 4 64568525 64572099 ECH
Spst4g02413 4 64568525 64572099 Spst4g02413 4 64568525 64572099 ECH
Spst5g00095 5 964004 968883 Spst4g02413 4 64568525 64572099 PCT