Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02412 ATGGTGCAATCAAGGAAATTCAGAGGTGTGAGGCAACGCCATTGGGGCTCGTGGGTTTCTGAGATTCGTCACCCATTATTGAAAAGGAGGGTGTGGCTTGGGACATTTGAGACAGCCGAGGAAGCAGCGAGAGCATATGATGAAGCAGCCATTTTGATGAGTGGAAGAAATGCTAAAACAAACTTCCCAGTTGGTGAAAACCAAATGGTGAATCAAAGTTCCACTACTTCCTCTTCCTCTTCATCCACCACCACTACATTGTCTGCAGTTCTGAGTGCAAAGCTTAGGAAGTGCTGCAAGTCCCCTTCACCTTCCCTCACGTGCCTAAGGCTTGACACTGAGAATTCCCACATAGGGGTGTGGCAGAAGAGAGCAGGCCCTCGTTCTGACTCTAACTGGATCATGATGGTTGAGTTGGAAAAAAAGAACAGCGAGGGTGATCAAGATCAAGGTCCTTCTTCTGACTCAGAAGTTCCTGTTGTTGTCGTTGATCATGCCCCAGAGAAAATAAAGCCCGAGGAAGGTAATGGCTTAGATGAGGAGCAGAGAATGGCCCTGCAGATGATAGAGGAACTTCTGAATAGGAATTGA 591 0.4738 MVQSRKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDEAAILMSGRNAKTNFPVGENQMVNQSSTTSSSSSSTTTTLSAVLSAKLRKCCKSPSPSLTCLRLDTENSHIGVWQKRAGPRSDSNWIMMVELEKKNSEGDQDQGPSSDSEVPVVVVDHAPEKIKPEEGNGLDEEQRMALQMIEELLNRN 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02412 196 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Spst4g02412 196 CDD AP2 6 64 IPR001471 GO:0003700|GO:0006355
Spst4g02412 196 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Spst4g02412 196 Pfam AP2 domain 6 54 IPR001471 GO:0003700|GO:0006355
Spst4g02412 196 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
Spst4g02412 196 Gene3D AP2/ERF domain 5 64 IPR036955 GO:0003700|GO:0006355
Spst4g02412 196 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 3 149 - -
Spst4g02412 196 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Spst4g02412 196 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Spst4g02412 196 FunFam Ethylene-responsive transcription factor 2 5 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02412 Spst-Chr4 64556693 64557691 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02412 1 196 AP2-EREBP Transcription Factor Family AT1G15360 62.069 4.11e-79 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Spst4g02412 AP2 1.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02412 - - gmx:100796962 310.071
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g02412 4 64556693 64557691 Spst4g02412 4 64556693 64557691 ECH