Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02410 ATGGGAGAATTGAAGGACACTGAGGCTTACGAGGAAGAGCTCCTCGATTACGAAGAAGAAGATGAGAAAGCTCCCGATTCTGCCAAGCCCGCCGAATCTGGCAAGAAGGGTTATGTTGGCATCCATAGTTCGGGATTTCGAGACTTCCTGTTGAAGCCAGAGCTTCTGCGAGCCATTGTAGATTCAGGATTTGAGCATCCTTCAGAAGTGCAACATGAATGCATCCCTCAAGCAATCTTAGGAATGGATGTCATTTGCCAAGCAAAATCTGGGATGGGAAAGACTGCTGTTTTTGTTCTTTCTACACTTCAGCAAGTTGATCCTGTTCCTGGTCAAGTTGCAGCTCTTGTCCTTTGCCACACAAGAGAACTGGCTTATCAGATTTGTCATGAATTTGAGAGGTTTAGCACATATCTTTCTGATATAAAGGCTGCTGTTTTCTATGGTGGTGTCAATATCAAGGTTCACAAAGAATTGCTCAAGAATGAATGTCCTCATATTGTTGTTGGAACTCCTGGGAGGATTCTTGCTCTGGCTAGAGATAAGGACCTTGGTTTAAAGAACGTGAGGCATTTTATACTTGATGAGTGTGACAAGATGCTCGAGTCACTTGATATGAGAAGAGATGTCCAAGAGATTTTCAAATTGACCCCTCATGATAAACAAGTGATGATGTTTTCAGCTACACTCAGTAAAGAGATTCGACCTGTTTGCAAGAAATTTATGCAAGATCCTATGGAAATTTATGTAGATGATGAGGCCAAATTGACTCTTCATGGTCTTGTCCAGCATTACATCAAATTGCAAGAGTCAGAGAAGAATAGGAAGTTGAATGATCTTCTTGATGCTCTGGACTTCAACCAAGTAGTTATTTTTGTCAAGAGTGTTAGCAGAGCTGCCGAGTTGAACAAGTTGCTTGTGGAATGTAACTTCCCATCCATCTGTATACATTCTGCGATGTCACAGGAAGAGAGATTGAAACGATACAAGGGCTTCAAGGAAGGGAAGCAAAGGATTCTCGTGGCAACCGACTTAGTAGGGAGGGGGATTGACATTGAACGTGTTAATATAGTTATTAATTATGACATGCCTGATTCTGCTGATACTTATTTGCACAGGGTGGGAAGAGCTGGTAGATTTGGCACGAAGGGGCTTGCAATTACTTTTGTGTCATCCACTGCCGACTCTGAAGTTCTTAATCAGGTGCAATCCAGGTTTGAAGTTGATATAAAGGAGCTTCCTGAACAAATTGACACTTCGACATATACCGCAAAAGTTCCATCGGAATGCCAAACTGATGACGTTTTGGAACAATCAGGAGGAGGAATTCGACTGTTACCCTCATTGAGGGATAATTAG 1359 0.4224 MGELKDTEAYEEELLDYEEEDEKAPDSAKPAESGKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQVDPVPGQVAALVLCHTRELAYQICHEFERFSTYLSDIKAAVFYGGVNIKVHKELLKNECPHIVVGTPGRILALARDKDLGLKNVRHFILDECDKMLESLDMRRDVQEIFKLTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLQESEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSAMSQEERLKRYKGFKEGKQRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSTADSEVLNQVQSRFEVDIKELPEQIDTSTYTAKVPSECQTDDVLEQSGGGIRLLPSLRDN 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02410 452 Gene3D - 257 425 IPR027417 -
Spst4g02410 452 SMART helicmild6 300 381 IPR001650 -
Spst4g02410 452 FunFam DEAD-box ATP-dependent RNA helicase 56-like 32 250 - -
Spst4g02410 452 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 276 421 IPR001650 -
Spst4g02410 452 CDD SF2_C_DEAD 261 390 - -
Spst4g02410 452 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 75 248 IPR014001 -
Spst4g02410 452 SMART ultradead3 63 264 IPR014001 -
Spst4g02410 452 FunFam DEAD-box ATP-dependent RNA helicase 257 425 - -
Spst4g02410 452 CDD DEADc_DDX39 43 250 - -
Spst4g02410 452 Pfam Helicase conserved C-terminal domain 274 381 IPR001650 -
Spst4g02410 452 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 42 399 - -
Spst4g02410 452 Pfam DEAD/DEAH box helicase 69 234 IPR011545 GO:0003676|GO:0005524
Spst4g02410 452 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 44 72 IPR014014 GO:0003724
Spst4g02410 452 Gene3D - 40 256 IPR027417 -
Spst4g02410 452 MobiDBLite consensus disorder prediction 1 35 - -
Spst4g02410 452 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 113 395 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02410 Spst-Chr4 64543831 64548223 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02410 1 422 Eukaryotic Initiation Factors Gene Family AT5G11200 82.581 0.0 745
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02410 K12812 - gmx:100799082 815.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g02410 4 64543831 64548223 Spst4g02410 4 64543831 64548223 ECH