Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02381 ATGGTTGGAGGTTCCATAGTAGGGTTGCAAGAACACCTCAAGTTAGCCCGAGACTACGCTCTAGAAGGGCTCTACGATACCTCCATTATCTTCTTCGACGGTGCCCTTGCCCAGATCAACAAACACCTAAGCACCGTCGAGGACCCTTTAATTCGCGCGAAATGGATGAATGTGAAGAAGGCGCTTTCGGAAGAAACCGAAGTTGTGAAGCAGTTAGATTCAGAGAGAAGGGCTTTCAAAGATAACCCCATTGGAAGACGCGCTGCTTCGCCTCCCATTTCTGCCAAGTCCTCGTCTTTTGTTTTTCAGCCGTTGGATGAGTACCCCACTTCATCAAGCGGTCCTGGTCCTATTGATGATCCTGATGTATGGCGGCCGCCCAGTAGGGATACCAGTAGGAGACCCGCCAGGTCCGGTCAAGTGGGTACCCGGAAATCTCCCCAAGATGGGGCCTGGGCACGAGGTTCTACTACTAGAAGTGGTACCACTGGGCGTGGTGGTGCTAAAGGTGGTGCTACTAGTAGGGTTAACTCGGGGACACGAGCATCCACTGCTGGAAAGAAAGGCAATGTTTCTGGAAAGTCTAGCAAGACGGATACGGCAGCTGTAACTAATGGACAGAATGGTGATGCTGAAGATGGTAAGTCAAAGAAGGGTCAATATGAAGGTCCTGATCCTGAATTGGCTGCAATGCTTGAAAGGGACGTGTTAGAAACCTCTCCTGGAGTTAGATGGGATGATGTTGCAGGGCTTACTGAAGCAAAAAGGCTTCTAGAAGAAGCTGTTGTGCTTCCCTTGTGGATGCCTGAATATTTCCAGGGAATCAGGAGACCATGGAAAGGTGTTCTTATGTTTGGACCTCCAGGAACTGGGAAGACACTTCTTGCTAAAGCAGTTGCTACTGAATGTGGGACCACTTTCTTCAATGTATCTTCTGCAACTTTAGCTTCTAAATGGCGTGGTGAGAGTGAGCGCATGGTGCGGTGTTTGTTTGATCTTGCAAGAGCATATGCACCAAGCACAATATTCATTGATGAAATTGATTCTCTGTGCAATGCTAGGGGGGCATCTGGAGAGCATGAATCGTCTAGAAGGGTGAAATCTGAACTTCTAGTTCAGGTTGATGGTGTAAGCAATAGTGCCACAAATGAAGATGGTAGCCGTAAAATAGTAATGGTTTTGGCCGCTACTAACTTCCCATGGGATATAGATGAGGCACTAAGGAGAAGGCTGGAAAAACGTATATATATTCCTCTTCCAAATTTTGAGAGTCGTAAAGAGCTGATCCGGATAAATTTGAAGACTGTTGAGGTGGCGGCTGATGTCAATATAGATGAAGTGGCTCGTCGGACAGAGGGCTATAGTGGAGATGATTTGACTAATGTCTGTCGTGACGCTTCCTTGAATGGTATGAGGCGTAAGATAGCAGGAAAGACTCGTGACGAAATCAAAAACATGTCCAAGGATGAGATTTCAAAGGATCCTGTTGCCATGTGTGATTTTGAAGAAGCTTTGGTAAAGGTCCAACGAAGTGTTTCTCAGGCTGACATTGAACGCCATGAGAAGTGGTTTACCGAGTTTGGATCAGCATAA 1593 0.4696 MVGGSIVGLQEHLKLARDYALEGLYDTSIIFFDGALAQINKHLSTVEDPLIRAKWMNVKKALSEETEVVKQLDSERRAFKDNPIGRRAASPPISAKSSSFVFQPLDEYPTSSSGPGPIDDPDVWRPPSRDTSRRPARSGQVGTRKSPQDGAWARGSTTRSGTTGRGGAKGGATSRVNSGTRASTAGKKGNVSGKSSKTDTAAVTNGQNGDAEDGKSKKGQYEGPDPELAAMLERDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVSNSATNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIRINLKTVEVAADVNIDEVARRTEGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMSKDEISKDPVAMCDFEEALVKVQRSVSQADIERHEKWFTEFGSA 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02381 530 Gene3D - 420 506 - -
Spst4g02381 530 Pfam ATPase family associated with various cellular activities (AAA) 282 419 IPR003959 GO:0005524|GO:0016887
Spst4g02381 530 FunFam Katanin p60 ATPase-containing subunit A1 240 408 - -
Spst4g02381 530 Hamap Meiotic spindle formation protein mei-1 [mei-1]. 7 530 IPR028596 GO:0008017|GO:0008568|GO:0051013
Spst4g02381 530 Pfam AAA+ lid domain 441 482 IPR041569 -
Spst4g02381 530 SMART AAA_5 278 421 IPR003593 GO:0016887
Spst4g02381 530 MobiDBLite consensus disorder prediction 133 164 - -
Spst4g02381 530 MobiDBLite consensus disorder prediction 104 224 - -
Spst4g02381 530 Gene3D - 4 80 - -
Spst4g02381 530 CDD Kp60-NTD 9 75 - -
Spst4g02381 530 Pfam Vps4 C terminal oligomerisation domain 483 528 IPR015415 -
Spst4g02381 530 FunFam Katanin p60 ATPase-containing subunit A1 420 506 - -
Spst4g02381 530 PANTHER AAA DOMAIN-CONTAINING 25 529 - -
Spst4g02381 530 FunFam Katanin p60 ATPase-containing subunit A1 4 80 - -
Spst4g02381 530 MobiDBLite consensus disorder prediction 173 210 - -
Spst4g02381 530 ProSitePatterns AAA-protein family signature. 391 410 IPR003960 GO:0005524|GO:0016887
Spst4g02381 530 Gene3D - 240 521 IPR027417 -
Spst4g02381 530 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 242 526 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02381 Spst-Chr4 64370037 64373809 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02381 203 522 Calmodulin-binding Proteins AT3G56690 36.982 3.65e-51 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02381 K07767 - gmx:100787634 942.184