Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02380 ATGGTTTGGATGAGTAAAGTTGAGGGTAATAGAGGGGCCGTTTGTATGATTTTCAAAAGGGGAAATCCAAGAAAACCTTCTAGCATTTATCAGGAAAACCTTCTAGCATTCTTCCCTGTTCAGACAGTGAATTGTTTCGCCTCAAGAAGACCTTATGCTGAGCTGCTCTCCTGCAAAGGGGAAAAATGTGATTTGTGGACTTCTTTGATTGACACACCAAGATTATACTTCTTCCTGCTGCTCAGAAACTTTGCAGAGATGAAGAAAGAAAGCAGTGTTACACTGAAAACTGGGGAGCTACCTGGTCGATTGACTCGGGCTCGAGCTGCTGCTCTCTGCGCATCAGGACAGCTACCCCCTTTGAAAGAAAGAGCACAGCAAAATCAGATGCAGTTATCCAGAGTCACTTCAAAAAGAGCAGCTTCTGATAATACATGTGTTCAGCGTAAAAAGAGGGCTGTTCTTCAGGATGTTACTAATGTTTGCTGTGAAAATGCGTACAAAAGTTGTTTCAACTCAAATAAAATTCAGGCTAAGAAATGCAAGCTGTCCAAGGCTGGTCAAATTAGTGCATCCATAGCTCCTTCTGTTGCTGTGGAGTCACTGCAATTAGAAGTTGACTCCAAAGCAAAGAGTTTACAGGAAACAGCATTGAAGTCAGAAGATACTATGTGCTCAAATAATTTGGAAAACAAAGAGCTTCTACGGCCAAGTTCCAATGAGTGTAACATGGATGTTAGACTGCCTGAAAGTCAGATGTCTGGAATATCTGCTCATCCTTTGATGTCTCAGAAGAAAGACAAGAAAGATAACCTTTCGAAACTTTTGACTGCATTGAAGGATCCAGACGTCATTAGCATAGACGATGATCTTGGAGATCCTCAATTGTGCAGCCTCTATGCCGCTGATATCTATGACACCATGCGTGTTGCTGAGCTTGCAAGAAGACCTTATCCTAATTTTATGGAGATGGTGCAGCGAGATATCACTCAAACCATGCGTGGAATACTGGTTGATTGGCTTGTAGAGGTTTCGGAGGAATACAAATTGGTTACAGATACTCTTTACCTCACTGTGTATCTCATAGATTGGTTCCTCTCCAAAAATTACATTGAAAGACAACGACTTCAGCTACTTGGCATCACCTGCATGCTAATTGCCTCGAAGTACGAAGAAATTAACGCCCCGCGTATTGAAGATTTCTGCTTCATCACAGACAATACATACACCAAAGCTGAGGTACTGAAAATGGAGTGTCAAGTGTTGAAGTCGTCTGAATATCAGCTGTTTGCTCCTACTATTAAAACATTTCTCAGGAGGTTTCTTCGGGCAGCACAAGCTTCATACAAGGACCCCAGCCTTGAATTGGAGTACCTGGCCAATTACCTAGCTGAACTAACACTGATGGACTACGGTTTGTTGAATTTCCTTCCCTCTATCATTGCTGCATCAGCTGTATTTCTTGCCAGGTGGACACTGGATCAATCAAACCACCCCTGGAATCCAACACTTCAGCACTATGCAAGTTACAAAGCATCAGATTTGAAAACCACAGTTCTTGCATTGCAGGACCTACAGCTGAATACTGATGGCTGCTCTCTAACTGCCATCCGCACAAAATATGGACAAGACAAGTTTAAATGTGTAGCCGCTCTGTCTTCACCAAAACTGCTTGAAACTTTGTTCTGA 1689 0.4251 MVWMSKVEGNRGAVCMIFKRGNPRKPSSIYQENLLAFFPVQTVNCFASRRPYAELLSCKGEKCDLWTSLIDTPRLYFFLLLRNFAEMKKESSVTLKTGELPGRLTRARAAALCASGQLPPLKERAQQNQMQLSRVTSKRAASDNTCVQRKKRAVLQDVTNVCCENAYKSCFNSNKIQAKKCKLSKAGQISASIAPSVAVESLQLEVDSKAKSLQETALKSEDTMCSNNLENKELLRPSSNECNMDVRLPESQMSGISAHPLMSQKKDKKDNLSKLLTALKDPDVISIDDDLGDPQLCSLYAADIYDTMRVAELARRPYPNFMEMVQRDITQTMRGILVDWLVEVSEEYKLVTDTLYLTVYLIDWFLSKNYIERQRLQLLGITCMLIASKYEEINAPRIEDFCFITDNTYTKAEVLKMECQVLKSSEYQLFAPTIKTFLRRFLRAAQASYKDPSLELEYLANYLAELTLMDYGLLNFLPSIIAASAVFLARWTLDQSNHPWNPTLQHYASYKASDLKTTVLALQDLQLNTDGCSLTAIRTKYGQDKFKCVAALSSPKLLETLF 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02380 562 Gene3D - 317 430 - -
Spst4g02380 562 SUPERFAMILY Cyclin-like 292 428 IPR036915 -
Spst4g02380 562 CDD CYCLIN_AtCycA_like_rpt1 293 428 - -
Spst4g02380 562 Pfam Cyclin, C-terminal domain 432 554 IPR004367 -
Spst4g02380 562 FunFam Cyclin A1 419 551 - -
Spst4g02380 562 CDD CYCLIN_AtCycA-like_rpt2 432 546 - -
Spst4g02380 562 FunFam Mitotic cyclin 6 317 417 - -
Spst4g02380 562 Pfam Cyclin, N-terminal domain 303 428 IPR006671 -
Spst4g02380 562 Gene3D - 303 551 - -
Spst4g02380 562 PANTHER CYCLINS 263 518 IPR039361 -
Spst4g02380 562 SUPERFAMILY Cyclin-like 432 557 IPR036915 -
Spst4g02380 562 SMART Cyclin_C_2 432 555 IPR004367 -
Spst4g02380 562 SMART cyclin_7 436 524 IPR013763 -
Spst4g02380 562 SMART cyclin_7 339 423 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02380 Spst-Chr4 64358126 64363569 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02380 87 562 Core Cell Cycle Gene Families AT1G80370 55.901 7.80e-173 495
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02380 K06627 - gmx:100789757 756.518
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g02380 4 64358126 64363569 Spst4g02380 4 64358126 64363569 ECH