Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02379 ATGGCCAAAGAAGATCTTGGACTTGAAATCACGGAGCTGAGGTTGGGTCTGCCCGATACGGAGCATGTGAGTGTGGCTAACAAGAACGGTGAGAAGAAGAATAAGAGGGTGTTCTCGGAGATTGATGGTGTTGGAGATGAAAACAGCTCCTCCGGCGGCGGCGACCGCAAAATGGAGAGCAAGAATCAAGTGGTGGGGTGGCCTCCGGTGTGCTCGTACAGGAAGAAGAACAGTGTGAACGAAGCTTCGAAAATGTACGTTAAGGTTAGCATGGATGGTGCTCCTTTCTTGCGTAAAATGGATCTGGGTCTGCACAAGGGATACTCCGATTTAGCCTTCGCTTTGGAGAAGCTCTTTGGTTGCTACGGAATGGTGGAAGCGTTGAAGAATGCAGAGAACAGTGAACACGTTCCCATTTATGAGGACAAAGATGGTGACTGGATGCTGGTTGGAGATGTTCCATGGGAAATGTTTATGGAGTCATGCAAGAGGCTGAGGATTATGAAGAGAGCAGATGCAAAGGGTTTCGGTTTGCAACCAAAAGGATCTTTAAAGGGATTCATAGAAAGCGTGGGAAAGTGA 582 0.4811 MAKEDLGLEITELRLGLPDTEHVSVANKNGEKKNKRVFSEIDGVGDENSSSGGGDRKMESKNQVVGWPPVCSYRKKNSVNEASKMYVKVSMDGAPFLRKMDLGLHKGYSDLAFALEKLFGCYGMVEALKNAENSEHVPIYEDKDGDWMLVGDVPWEMFMESCKRLRIMKRADAKGFGLQPKGSLKGFIESVGK 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02379 193 MobiDBLite consensus disorder prediction 27 42 - -
Spst4g02379 193 Gene3D - 78 180 - -
Spst4g02379 193 SUPERFAMILY CAD & PB1 domains 77 169 - -
Spst4g02379 193 Pfam AUX/IAA family 32 176 IPR033389 -
Spst4g02379 193 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 6 173 IPR003311 GO:0005634|GO:0006355
Spst4g02379 193 MobiDBLite consensus disorder prediction 27 61 - -
Spst4g02379 193 FunFam Auxin-responsive protein 79 180 - -
Spst4g02379 193 ProSiteProfiles PB1 domain profile. 84 172 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02379 Spst-Chr4 64351931 64354649 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02379 80 191 B3 DNA Binding Superfamily AT4G23980 32.143 8.22e-11 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Spst4g02379 AUX_IAA 2.1e-42 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02379 K14484 - gmx:547784 339.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g02379 4 64351931 64354649 Spst5g00143 5 1357650 1359757 PCT