Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02374 ATGATTCAAAATGGTTGCATTGTATCCCAGGGGTGTGCCCCTGTGAATTCTAGGGTACGCAACCATGTCATACCTAGTAGCTCTGTCTTTCGTTGTGCTTCGCGAATGCCTGCTAAGGTTGCCGCCTCAAACATCCGGAGCTTTTCGGGACATAATTTAGAATGTAGATCCTCGTTGCCTAGAGGAATGACTTTTTCAAACAAGTTTGCTGCATCAAGCTTACGTTTAAGTGAGGGTCAAAATCTTCTCTTTCGAACTTTCCCTGTGTTACCTCAGTTGCGCAAGTCAAATGTGGTCCCTAGAGCATCGAAGGATGTCCCGACTAGCTTCCGTTATCCTCCAATGACCAAAAAACCGCAATGGTGGTGGAGATCATTAGCATGCCTCCCTTACCTCATGCCCCTTCATGAGACATGGATGTACGCTGAGACAGCATATAATCTTCACCCATTTTTGGAATGCTTTGAATTCTATACCTACCCTTTTCTTATGGCAATTGGAAGCCTGCCGAGCTGGTTTCTCATGGCATACTTTTTTGTTGCGTATCTTGGAATTGTGAGGAGAAAAGAATGGCCTCATTTCTTCAGATTTCATGTTGTGATGGGAATGTTATTAGAGATTGCCCTGCAGGTTATAGGAACTGTGAGCCGCTGGTTGCCAATGTCACTCTACTGGGGTAAACTGGGAATGCATTTCTGGACTGCCGTATCATTTGGTTATCTCTTTACTGTCTTGGAGTGCATAAGGTGTGCTCTTGTCGGTATGGCTCTATCTCTCTCCCCTTTGACATTCACTTCTGTCGATTTCAATCACAATGCACATTACCTATCAGATAGTCCGTATCAAAACAGCGTTCCGTTCCCCTTGTTCCCCTTCGATTGTAATCATATTTGCACTCTTAACTCTGCACTGCGACGCAAACCTCGTCGCGTTCCTCTCTCACTCTTTCTCTCCATCTTGATCTATTGGTCTCTTCGAAATCGGTTGATCTCCGACGAGTTCTCGCGACAAAAGCTAGCTAGTTTCTTCAATATTCGGAAATGCCTCTCCGACTCGAAATCAAGGATTCTAGCGAGTTTATACTCTGGAACTGTCTGTATCTGGAACCACCAATCTCAGACCATGGCTAAGTCATTTGAGGCTACTGAGTTACCAGTTAGGTCAGCTAAGTTTATTGCACGCAAACAGTGGGTTGTGGCAGGGGCAGATGATATGTTTATTCGTGTATATAATTACAACACAATGGATAAAGTTAAAGTATTTGAGGCACATACAGACTACATTCGGTGTGTGGCAGTTCATCCTACCCTTCCGTATGTGTTGTCATCATCTGATGACATGCTCATAAAGCTTTGGGATTGGGAAAAGGGCTGGATCTGTACCCAGATATTTGAGGGACATTCTCATTATGTCATGCAAGTGACATTTAATCCTAAAGACACAAACACCTTTGCCAGTGCATCTCTTGATCGCACCATAAAGATTTGGAATCTTGGCTCTCCTGACCCCAATTTTACATTGGATGCCCATCAAAAAGGAGTGAATTGTGTCGATTACTTTACTGGTGGTGACAAACCTTATCTAATTACTGGTTCTGATGATCACACTGCCAAGGTATGGGATTATCAAACCAAGAGTTGTGTCCAGACTCTAGAAGGTCACACACACAATGTATCTGCGGTATGCTTTCATCCTGAATTACCTATAATCATTACTGGCTCTGAAGATGGCACTGTGCGCATTTGGCATTCAACAACTTACAGGCTTGAAAACACATTGAACTATGGCCTTGAAAGAGTTTGGGCTATTGGATACCTCAAGGGTTCACGTCGGGTTGTGATAGGCTATGATGAAGGTACTATTATGATCAAACTTGGTCGAGAAGAACCTGTAGCCAGCATGGATAACAGTGGGAAAATAATTTGGGCTAAGCATAATGAAATTCAAACTGTCAATATAAGGAGTGTAGGAGCAGAAGTGGAGATTGCTGATGGAGAAAGGTTACCATTGGCTGTTAAGGAGTTGGGCACCTGTGATCTCTATCCACAAAGTTTAAGGCACAATCCAAATGGGAGGTTTGTTGTTGTTTGTGGAGATGGGGAATATATTATATACACTGCTTTGGCGTGGAGAAATAGATCATTTGGTTCGGCCCTGGAATTTGCTTGGTCTTCTGATGGGGAATATGCAGTAAGAGAAAGTACTTCGAAGGTCAAAATTTTCAGCAAAAATTTCCAGGAAAAGAAGAGTATCCGACCAACTTTTTCAGCTGAACGAATTTTTGGTGGCACTGTATTGGCAATGTGCTCAAATGATTTCATCTGCTTTTATGATTGGGCTGAATGCAGGTTGATTCGTCGTATTGATGTTAATGTTAAGAACCTCTACTGGGCGGATAGTGGCGATCTAGTGACAATTGCTAGTGATACATCATTCTTCATCCTGAAGTACAATCGGGATGTTGTTGCATCATATTTAGATAGTGGAAGCCCTGCAGAGGAGCAAGGTGTAGAAGATGCCTTTGAGCTCCTACATGAAATGAATGAGCGTGTCAGGACAGGGATCTGGGTTGGGGATTGTTTTATCTACAACAATTCTTCTTGGAGGCTTAACTATTGTGTTGGTGGTGAGGTAACTACAATGTTTCATTTGGACCGTCCGATGTACTTGTTGGGATATCTTGCCAGCCAAAGTAGGGTCTATTTGATAGACAAGGAGTTCAATGTTATGGGATACACACTACTTTTAAGCTTGATTGAGTACAAGACACTTGTCATGCGTGGTGATTTGGAAAGAGCCAATGAAATTCTACCATCAATTCCGGAAGATCATCATAACAGTGTGGCTCGTTTCCTGGAATCACGAGGGATGATAGAGAATGCTCTTGAAGTAGCTACTGACCCTGACTACAGGTTTGATCTAGCCATACAGCTTGGAAGATTAGAGGTTGCTAAGGGTATTGCCACTGAAGTGCAGAGTGAGTCTAAATGGAAGCAATTGGGAGAATTAGCCATGTCTACTGGAAAGTTAGAAATGGCTGAAGAGTGTTTAAAATATGCAATGGATTTCAGTGGGTTGTTGCTGCTATATTCCTCTTTAGGGGATGCTGAAGGAATATCAAAACTTGCAACTCTTACTAAAGAGCAAGGGAAGAATAATGTTGCGTTCCTTTGCTTATTCATGTTGGGTAAACTTGAGGACTGCCTTCAACTGTTGGTAGAAAGCAATCGGATTCCAGAGGCTGCTTTAATGGCCCGATCCTATCTCCCAAGCAAAGTCCCAGAGATAGTGGCAATTTGGAGAAAAGATCTCAGTAAGGTTAATTCAAAAGCAGCCGAATCATTGGCTGATCCAGAGGAGTATCCTAATTTGTTTGATGATTGGCAAGTTGCACTTGCTGTTGAATCTAAAGTAGCAGAAACAAGAGGCGTTTACCCTCCTGCATCAGAGTATGTGAACCAGGCTGATAAATCACGTATCACCCTCGTTGAAGCTTTCAGAAATATGCAGATAGAAGATGGGGATCAGCCTCTTGAGAATGGAAACTCCATCCATGAGTTGACTGAACAAAATGGAGAAGAGCACTATACAGATGAACACGAGGAACAAAATGGAGAGGAAGGGAGCCAAGAGGAGGCAGTTGTAGTGGATGCCGATTCTACTGATGGGGCAGTCCTCATCAATGGTAATGAGGCAGACGAAGATCTAGGTTTTGGTCGGGGTTTATCGGGTGTTGCTCATTCGGTGTTAATGGCTACTTCGGTTGAAGCAATCAACGGTGAGTATGATAGTGATCCCGAAGAGGCAAAGAGACCGTTAACTATGCGGAGGCGCGAAGCAAGCGACGACGAGGAAGCCGAAGGGGAAGTAGTCGCTGATAAGAGGGAAGATCGTAGAGTAGAGGTTCGTTCTGTTGACTTAGATGATGAAGGAGGTGTTGAAGATTATGATGATGATGACGTTGAAGGAGAAGAAGAATTGGAAGAAGAAGAGACAGTTGAAGAAGAAGTGTACGAGGAGAAGAGTGCAAGTGTTGGGGTTGAGGTTGAGGTTGAGGGTTTAGTGGTTAAGGAATCTGATGATGATCTTAGGCCCCCTTTGGAAGATTCTGTTGAAGACCATTCTGAGGAGAAAAAGGAGACTGAACCATTTGCGGTGCCCACAGCCGGAGCTTTTTACATGCATGATGACCGATTTAGGGACAATGCCGGTGCCCGCAGCAGATTGATACATGGTGGTGGAAGGAGGCTGTGGGAATCCAAAGATGACAAAAAATGGGGACATGATAAATTTGAGGAAATTTTGCACGAAAGGCACTACGAGGAGAGGAGACCTTCTAAGGGTAGTTATCGTGGCCGTGGTAATGGTCGAGGTCATGATTTTGGAGGGTATGGTCGAGGAAGCAGGAAAGGATATAATAACGGTAACAATCAAAATCAGATGCCTAAGAGTGTTGTGAGAGGAAGAGGCCCCCAAAAGTATGAACGCACCAATTTAAGCAATGCACCATCTCCCCAAGTGCAAAATAAACAATCCCATAAATCTCGTGAGAAAAAGTCAAATGTTGGTTCAGAGAGGACTACCACACCTGCTTCCCATGCAAAATTTGATCCTGTGCCTGTTAAAAATCAAGTGTTCGCTTCAAATTTGAATTCATCATCACCGCCATATTACCCATCAGGCTCTTCCAACAATGATATTAATTTGGCACAAAAGAGGGAGGTACAGACGGGTGGCAGTAGCGGGAACATTGGTCCTGTTGTTATGGATGAGGGTTTTCCAGTTCAACTAAACAATGATCTGGTTCGGGGAAAGAATGTTGTGGATTCCATCAGCATGGCAAAGTTGTATATTAATGAATCCATCTCTCCATCTGTTAGAAAGCCTTTGAACAATGTACATAAGGCACCACCTGGATCTTCTGGAGTCAATACTTCTCAATCTCCTCACCTAAAGGCTTCTGGGACTGGCAGGGATGTATCAATCCCAGTACAGACAAATCATCAGCGTGCTCCTTCACATAATAAAGTTTCTCCATCACAATTCCAGGCTATTCAGACAAGTTTTGTTCCAGGGAGGAGCTCAACATCTGTGCAAGCTACTACCCCACAGTTGGGCCATAGACCTGGCAGTGGGTCTCAGTTGTCATCCCCCCCCAAAACATCCAAGGCAATTAATTCACATGATTCCGGAGAAATGGATTCAGCATCTGAATCAGATAAAGGCAAAGGTGCTTTTATTGGGAAGGGGAGGGGAGGTTCCCATGGTGCAGGACAGGGAACTTTTGTTTATGGCGGTGCACAGGTAATGGGCACTGCTGGAAATGTAGGTGTTAGTCATGGAGATCCAAACTTCCCTGCCTTCTTGCCAGTCATGCAATTTGGGGGCCAGCATCCTGGTGGTATAGGAGTTCCTGCTGTTGGCATGGCATTCCCTGGATATGTTGCTCAGCCTCAACTTGGTTTGGGAAAGTCAGAAATGACATGGCTACCAGTCTTGGCTGGTACTGCAGGAGCTTTAGGGCCTACATACCCATACCTTGCTGTTGATGGTGCAAGCAGTCACCAATCTGGACAGACCTCTGCAATGGGTACTTCAAGCAAGGAACATAATGTTGACAAAGCTAATAATGAATTGAAGCCACCACAGAGATCTGAGTCTTCAAGTGAAGAGTTTGGACAAAGGCAGAATAAACCGCGAAGATATTCAGAGATGAATTTTGGTCAGTGA 5730 0.44 MIQNGCIVSQGCAPVNSRVRNHVIPSSSVFRCASRMPAKVAASNIRSFSGHNLECRSSLPRGMTFSNKFAASSLRLSEGQNLLFRTFPVLPQLRKSNVVPRASKDVPTSFRYPPMTKKPQWWWRSLACLPYLMPLHETWMYAETAYNLHPFLECFEFYTYPFLMAIGSLPSWFLMAYFFVAYLGIVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWLPMSLYWGKLGMHFWTAVSFGYLFTVLECIRCALVGMALSLSPLTFTSVDFNHNAHYLSDSPYQNSVPFPLFPFDCNHICTLNSALRRKPRRVPLSLFLSILIYWSLRNRLISDEFSRQKLASFFNIRKCLSDSKSRILASLYSGTVCIWNHQSQTMAKSFEATELPVRSAKFIARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWICTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHSTTYRLENTLNYGLERVWAIGYLKGSRRVVIGYDEGTIMIKLGREEPVASMDNSGKIIWAKHNEIQTVNIRSVGAEVEIADGERLPLAVKELGTCDLYPQSLRHNPNGRFVVVCGDGEYIIYTALAWRNRSFGSALEFAWSSDGEYAVRESTSKVKIFSKNFQEKKSIRPTFSAERIFGGTVLAMCSNDFICFYDWAECRLIRRIDVNVKNLYWADSGDLVTIASDTSFFILKYNRDVVASYLDSGSPAEEQGVEDAFELLHEMNERVRTGIWVGDCFIYNNSSWRLNYCVGGEVTTMFHLDRPMYLLGYLASQSRVYLIDKEFNVMGYTLLLSLIEYKTLVMRGDLERANEILPSIPEDHHNSVARFLESRGMIENALEVATDPDYRFDLAIQLGRLEVAKGIATEVQSESKWKQLGELAMSTGKLEMAEECLKYAMDFSGLLLLYSSLGDAEGISKLATLTKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVPEIVAIWRKDLSKVNSKAAESLADPEEYPNLFDDWQVALAVESKVAETRGVYPPASEYVNQADKSRITLVEAFRNMQIEDGDQPLENGNSIHELTEQNGEEHYTDEHEEQNGEEGSQEEAVVVDADSTDGAVLINGNEADEDLGFGRGLSGVAHSVLMATSVEAINGEYDSDPEEAKRPLTMRRREASDDEEAEGEVVADKREDRRVEVRSVDLDDEGGVEDYDDDDVEGEEELEEEETVEEEVYEEKSASVGVEVEVEGLVVKESDDDLRPPLEDSVEDHSEEKKETEPFAVPTAGAFYMHDDRFRDNAGARSRLIHGGGRRLWESKDDKKWGHDKFEEILHERHYEERRPSKGSYRGRGNGRGHDFGGYGRGSRKGYNNGNNQNQMPKSVVRGRGPQKYERTNLSNAPSPQVQNKQSHKSREKKSNVGSERTTTPASHAKFDPVPVKNQVFASNLNSSSPPYYPSGSSNNDINLAQKREVQTGGSSGNIGPVVMDEGFPVQLNNDLVRGKNVVDSISMAKLYINESISPSVRKPLNNVHKAPPGSSGVNTSQSPHLKASGTGRDVSIPVQTNHQRAPSHNKVSPSQFQAIQTSFVPGRSSTSVQATTPQLGHRPGSGSQLSSPPKTSKAINSHDSGEMDSASESDKGKGAFIGKGRGGSHGAGQGTFVYGGAQVMGTAGNVGVSHGDPNFPAFLPVMQFGGQHPGGIGVPAVGMAFPGYVAQPQLGLGKSEMTWLPVLAGTAGALGPTYPYLAVDGASSHQSGQTSAMGTSSKEHNVDKANNELKPPQRSESSSEEFGQRQNKPRRYSEMNFGQ 1909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02374 1909 CDD WD40 348 623 - -
Spst4g02374 1909 SMART Btz_2 1352 1456 IPR018545 GO:0003729|GO:0006397|GO:0035145
Spst4g02374 1909 MobiDBLite consensus disorder prediction 1433 1540 - -
Spst4g02374 1909 Gene3D - 916 1124 - -
Spst4g02374 1909 MobiDBLite consensus disorder prediction 1353 1383 - -
Spst4g02374 1909 MobiDBLite consensus disorder prediction 1627 1660 - -
Spst4g02374 1909 Pfam Coatomer WD associated region 645 1089 IPR006692 GO:0005198|GO:0006886|GO:0016192|GO:0030117
Spst4g02374 1909 SUPERFAMILY WD40 repeat-like 674 818 IPR036322 GO:0005515
Spst4g02374 1909 Pfam CASC3/Barentsz eIF4AIII binding 1372 1454 IPR018545 GO:0003729|GO:0006397|GO:0035145
Spst4g02374 1909 Gene3D - 347 626 IPR015943 GO:0005515
Spst4g02374 1909 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 421 453 - -
Spst4g02374 1909 CDD Coatomer_WDAD_beta-like 630 1105 - -
Spst4g02374 1909 MobiDBLite consensus disorder prediction 1852 1870 - -
Spst4g02374 1909 ProSiteProfiles Trp-Asp (WD) repeats profile. 551 592 IPR001680 GO:0005515
Spst4g02374 1909 MobiDBLite consensus disorder prediction 1260 1389 - -
Spst4g02374 1909 MobiDBLite consensus disorder prediction 1852 1909 - -
Spst4g02374 1909 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 551 582 - -
Spst4g02374 1909 PANTHER PROTEIN MLN51 HOMOLOG 1251 1909 IPR044796 GO:0003729|GO:0006397|GO:0035145
Spst4g02374 1909 MobiDBLite consensus disorder prediction 1310 1337 - -
Spst4g02374 1909 MobiDBLite consensus disorder prediction 1691 1752 - -
Spst4g02374 1909 Pfam WD domain, G-beta repeat 546 582 IPR001680 GO:0005515
Spst4g02374 1909 Pfam WD domain, G-beta repeat 417 453 IPR001680 GO:0005515
Spst4g02374 1909 Pfam WD domain, G-beta repeat 503 541 IPR001680 GO:0005515
Spst4g02374 1909 Pfam WD domain, G-beta repeat 460 497 IPR001680 GO:0005515
Spst4g02374 1909 NCBIfam Tic20 family chloroplast protein importer 1 256 IPR005691 -
Spst4g02374 1909 SMART WD40_4 372 411 IPR001680 GO:0005515
Spst4g02374 1909 SMART WD40_4 500 541 IPR001680 GO:0005515
Spst4g02374 1909 SMART WD40_4 414 453 IPR001680 GO:0005515
Spst4g02374 1909 SMART WD40_4 457 497 IPR001680 GO:0005515
Spst4g02374 1909 SMART WD40_4 335 369 IPR001680 GO:0005515
Spst4g02374 1909 SMART WD40_4 544 583 IPR001680 GO:0005515
Spst4g02374 1909 MobiDBLite consensus disorder prediction 1291 1309 - -
Spst4g02374 1909 MobiDBLite consensus disorder prediction 1637 1660 - -
Spst4g02374 1909 MobiDBLite consensus disorder prediction 1433 1449 - -
Spst4g02374 1909 ProSiteProfiles Trp-Asp (WD) repeats profile. 507 550 IPR001680 GO:0005515
Spst4g02374 1909 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 464 498 - -
Spst4g02374 1909 MobiDBLite consensus disorder prediction 1494 1510 - -
Spst4g02374 1909 MobiDBLite consensus disorder prediction 1263 1284 - -
Spst4g02374 1909 Pfam Chloroplast import apparatus Tic20-like 93 259 IPR005691 -
Spst4g02374 1909 SUPERFAMILY WD40 repeat-like 349 704 IPR036322 GO:0005515
Spst4g02374 1909 ProSiteProfiles Trp-Asp (WD) repeats profile. 421 453 IPR001680 GO:0005515
Spst4g02374 1909 MobiDBLite consensus disorder prediction 1546 1565 - -
Spst4g02374 1909 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 507 544 - -
Spst4g02374 1909 PRINTS G protein beta WD-40 repeat signature 570 584 IPR020472 -
Spst4g02374 1909 PRINTS G protein beta WD-40 repeat signature 528 542 IPR020472 -
Spst4g02374 1909 PRINTS G protein beta WD-40 repeat signature 484 498 IPR020472 -
Spst4g02374 1909 FunFam Coatomer subunit beta 916 1124 - -
Spst4g02374 1909 FunFam Coatomer subunit beta 346 626 - -
Spst4g02374 1909 ProSiteProfiles Trp-Asp (WD) repeats profile. 464 506 IPR001680 GO:0005515
Spst4g02374 1909 MobiDBLite consensus disorder prediction 1691 1732 - -
Spst4g02374 1909 MobiDBLite consensus disorder prediction 1191 1213 - -
Spst4g02374 1909 MobiDBLite consensus disorder prediction 1470 1485 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02374 Spst-Chr4 64290440 64310335 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02374 56 255 Chloroplast and Mitochondria Gene Families AT4G03320 39.048 5.47e-38 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02374 K17302 - gmx:100797508 1702.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g02374 4 64290440 64310335 Spst4g02374 4 64290440 64310335 ECH
Spst5g00152 5 1451828 1461998 Spst4g02374 4 64290440 64310335 PCT